Matt Thomson

Assistant Professor, California Institute of Technology

Joined

October 2020

Names

Matt Thomson (Preferred)

Emails

****@caltech.edu (Confirmed)

Personal Links

Homepage

Career & Education History

Assistant Professor

California Institute of Technology (caltech.edu)

2016 – Present

Advisors, Relations & Conflicts

No relations added

Expertise

No areas of expertise listed

Publications

A Sensing Whole Brain Zebrafish Foundation Model for Neuron Dynamics and Behavior
Sam Fatehmanesh, Matt Thomson, James Gornet, David Prober
- NeurIPS 2025 Workshop BrainBodyFM
- Readers: Everyone
A Sensing Whole Brain Zebrafish Foundation Model for Neuron Dynamics and Behavior
Sam Fatehmanesh, Matt Thomson, James Gornet, David Prober
- DBM 2025 Findings Poster
- Readers: Everyone
Rational Tuning of LLM Cascades via Probabilistic Modeling
Michael J. Zellinger, Matt Thomson
- Accepted by TMLR
- Readers: Everyone
Building Foundation Models to Characterize Cellular Interactions via Geometric Self-Supervised Learning on Spatial Genomics
Yuning You, Zitong Jerry Wang, Kevin Fleisher, Rex Liu, Matt Thomson
- MLGenX 2025
- Readers: Everyone
Efficiently Deploying LLMs with Controlled Risk
Michael J. Zellinger, Matt Thomson
- ICLR 2025 Conference Withdrawn Submission
- Readers: Everyone
Unexplored regions of the protein sequence-structure map revealed at scale by a library of “foldtuned” language models
Arjuna Subramanian, Matt Thomson
- GenBio@NeurIPS2023 Poster
- Readers: Everyone
What's the Magic Word? A Control Theory of LLM Prompting
Aman Bhargava, Cameron Witkowski, Manav Shah, Matt Thomson
- Submitted to ICLR 2024
- Readers: Everyone
Neural networks learn an environment's geometry in latent space by performing predictive coding on visual scenes
James Gornet, Matt Thomson
- Published: 21 Nov 2022, Last Modified: 05 May 2023
- InfoCog @ NeurIPS 2022 Oral
- Readers: Everyone
Generating counterfactual explanations of tumor spatial proteomes to discover effective, combinatorial therapies that enhance cancer immunotherapy
Zitong Jerry Wang, Matt Thomson
- Published: 21 Oct 2022, Last Modified: 05 May 2023
- AI4Science Poster
- Readers: Everyone
Connectedness of loss landscapes via the lens of Morse theory
Danil Akhtiamov, Matt Thomson
- Published: 07 Nov 2022, Last Modified: 05 May 2023
- NeurReps 2022 Poster
- Readers: Everyone

View all 13 publications