Meghana Kshirsagar

Applied Scientist, Microsoft

Joined

September 2017

Names

Meghana Kshirsagar

Emails

****@gmail.com (Confirmed)

Personal Links

Career & Education History

Applied Scientist

Microsoft (microsoft.com)

2019 – Present

Postdoc

Memorial Sloan Kettering Cancer Center (mskcc.org)

2016 – 2019

Postdoc

International Business Machines (ibm.com)

2015 – 2016

PhD student

Carnegie Mellon University (cmu.edu)

2010 – 2015

Advisors, Relations & Conflicts

PhD Advisor

Jaime Carbonell

2010 – 2015

Expertise

AI for health

2019 – Present

Domain Adaptation

2016 – Present

Autoencoders

2016 – Present

Multitask Learning

2010 – Present

Topic Models

2010 – Present

Transfer Learning

2010 – Present

Computational Biology

2010 – Present

Publications

Predictive Models for Kidney Offer Acceptance: Challenges and Strategies
Carlos Martinez, Md Nasir, Meghana Kshirsagar, Cass McCharen, Rae Shean, Juan Lavista Ferres, Rahul Dodhia, William B. Weeks, Reut Hod-Dvorai
- Journal of Transplantation
- Readers: Everyone
Rapid and accurate prediction of protein homo-oligomer symmetry using Seq2Symm
Meghana Kshirsagar, Artur Meller, Ian R. Humphreys, Samuel Sledzieski, Yixi Xu, Rahul Dodhia, Eric Horvitz, Bonnie Berger, Gregory R. Bowman, Juan Lavista Ferres, David Baker, Minkyung Baek
- Nature Communications
- Readers: Everyone
Deep topic modeling of spatial transcriptomics in the rheumatoid arthritis synovium identifies distinct classes of ectopic lymphoid structures
Preethi K. Periyakoil, Melanie H. Smith, Meghana Kshirsagar, Daniel Ramirez, Edward F. DiCarlo, Susan M. Goodman, Alexander Y. Rudensky, Laura T. Donlin, Christina S. Leslie
- Crossref
- Readers: Everyone
Rapid and accurate prediction of protein homo-oligomer symmetry with Seq2Symm
Meghana Kshirsagar, Artur Meller, Ian Humphreys, Samuel Sledzieski, Yixi Xu, Rahul Dodhia, Eric Horvitz, Bonnie Berger, Gregory Bowman, Juan Lavista Ferres, David Baker, Minkyung Baek
- Crossref
- Readers: Everyone
Democratizing Protein Language Models with Parameter-Efficient Fine-Tuning
Samuel Sledzieski, Meghana Kshirsagar, Minkyung Baek, Bonnie Berger, Rahul Dodhia, Juan Lavista Ferres
- Crossref
- Readers: Everyone
Assessment of Differentially Private Synthetic Data for Utility and Fairness in End-to-End Machine Learning Pipelines for Tabular Data
Mayana Pereira, Meghana Kshirsagar, Sumit Mukherjee, Rahul Dodhia, Juan Lavista Ferres, Rafael de Sousa
- CoRR 2023
- Readers: Everyone
BindVAE: Dirichlet variational autoencoders for de novo motif discovery from accessible chromatin
Meghana Kshirsagar, Han Yuan, Juan Lavista Ferres, Christina Leslie
- Genome Biology
- Readers: Everyone
Predicting the locations of cryptic pockets from single protein structures using the PocketMiner graph neural network
Artur Meller, Michael Ward, Jonathan Borowsky, Jeffrey M. Lotthammer, Meghana Kshirsagar, Felipe Oviedo, Juan Lavista Ferres, Gregory R. Bowman
- Crossref
- Readers: Everyone
Risk of hospitalization and mortality after breakthrough SARS-CoV-2 infection by vaccine type utilizing medical claims data (Preprint)
Meghana Kshirsagar, Sumit Mukherjee, Nasir Md, Nicholas Becker, Rahul Dodhia, Juan Lavista Ferres, Barbra Richardson
- Crossref
- Readers: Everyone
Interpretable network propagation with application to expanding the repertoire of human proteins that interact with SARS-CoV-2
Jeffrey N Law, Kyle Akers, Nure Tasnina, Catherine M Della Santina, Shay Deutsch, Meghana Kshirsagar, Judith Klein-Seetharaman, Mark Crovella, Padmavathy Rajagopalan, Simon Kasif, T M Murali
- GigaScience
- Readers: Everyone

View all 23 publications

Co-Authors

View all 77 co-authors