Mingyu Li

PhD student, Shanghai Jiaotong University

Joined

January 2023

Names

Mingyu Li (Preferred)

Emails

****@sjtu.edu.cn (Confirmed)

Personal Links

Career & Education History

PhD student

Shanghai Jiaotong University (sjtu.edu.cn)

2022 – 2027

Advisors, Relations & Conflicts

No relations added

Expertise

No areas of expertise listed

Publications

ProteinAE: Protein Diffusion Autoencoders for Structure Encoding
Shaoning Li, Le Zhuo, Yusong Wang, Mingyu Li, Xinheng He, Fandi Wu, Hongsheng Li, Pheng-Ann Heng
- ICLR 2026 Poster
- Readers: Everyone
Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling
Xiangxin Zhou, Mingyu Li, Yi Xiao, Jiahan Li, Dongyu Xue, Zaixiang Zheng, Jianzhu Ma, Quanquan Gu
- ICML 2025 poster
- Readers: Everyone
Zero-Shot Cyclic Peptide Design via Composable Geometric Constraints
Dapeng Jiang, Xiangzhe Kong, Jiaqi Han, Mingyu Li, Rui Jiao, Wenbing Huang, Stefano Ermon, Jianzhu Ma, Yang Liu
- ICML 2025 poster
- Readers: Everyone
Improving AlphaFlow for Efficient Protein Ensembles Generation
Shaoning Li, Mingyu Li, Yusong Wang, Xinheng He, Zhang Jian, Nanning Zheng, Pheng-Ann Heng
- ICML2024-AI4Science Poster
- Readers: Everyone
F$^3$low: Frame-to-Frame Coarse-grained Molecular Dynamics with SE(3) Guided Flow Matching
Shaoning Li, Yusong Wang, Mingyu Li, Bin Shao, Nanning Zheng, Zhang Jian, Jian Tang
- GEM Poster
- Readers: Everyone

Co-Authors