Olivier Bodenreider

Senior Scientist, National Library of Medicine

Joined

May 2020

Names

Olivier Bodenreider (Preferred)

Emails

****@mail.nih.gov (Confirmed)

****@nlm.nih.gov (Confirmed)

Personal Links

Career & Education History

Senior Scientist

National Library of Medicine (nlm.nih.gov)

2011 – Present

Advisors, Relations & Conflicts

No relations added

Expertise

biomedical ontology

Present

Publications

Solving the Right Problem is Key for Translational NLP: A Case Study in UMLS Vocabulary Insertion
Bernal Jimenez Gutierrez, Yuqing Mao, Vinh Nguyen, KIN WAH FUNG, Yu Su, Olivier Bodenreider
- EMNLP 2023 Findings
- Readers: Everyone
A deep learning approach to identify missing is-a relations in SNOMED CT
Rashmie Abeysinghe, Fengbo Zheng, Elmer V. Bernstam, Jay Shi, Olivier Bodenreider, Licong Cui
- Published: 01 Jan 2023, Last Modified: 27 Jun 2023
- J. Am. Medical Informatics Assoc. 2023
- Readers: Everyone
Context-Enriched Learning Models for Aligning Biomedical Vocabularies at Scale in the UMLS Metathesaurus
Vinh Nguyen, Hong Yung Yip, Goonmeet Bajaj, Thilini Wijesiriwardene, Vishesh Javangula, Srinivasan Parthasarathy, Amit P. Sheth, Olivier Bodenreider
- 2022 (modified: 03 Feb 2023)
- WWW 2022
- Readers: Everyone
UVA Resources for the Biomedical Vocabulary Alignment at Scale in the UMLS Metathesaurus
Vinh Nguyen, Olivier Bodenreider
- Published: 01 Jan 2022, Last Modified: 27 Jun 2023
- CoRR 2022
- Readers: Everyone
Evaluating Biomedical Word Embeddings for Vocabulary Alignment at Scale in the UMLS Metathesaurus Using Siamese Networks
Goonmeet Bajaj, Vinh Nguyen, Thilini Wijesiriwardene, Hong Yung Yip, Vishesh Javangula, Amit P. Sheth, Srinivasan Parthasarathy, Olivier Bodenreider
- Published: 01 Jan 2022, Last Modified: 27 Jun 2023
- Insights@ACL 2022
- Readers: Everyone
Powering Semantic Analysis with Bio-ontologies
Olivier Bodenreider
- Published: 01 Jan 2022, Last Modified: 27 Jun 2023
- WWW (Companion Volume) 2022
- Readers: Everyone
UBERT: A Novel Language Model for Synonymy Prediction at Scale in the UMLS Metathesaurus
Thilini Wijesiriwardene, Vinh Nguyen, Goonmeet Bajaj, Hong Yung Yip, Vishesh Javangula, Yuqing Mao, Kin Wah Fung, Srinivasan Parthasarathy, Amit P. Sheth, Olivier Bodenreider
- Published: 01 Jan 2022, Last Modified: 27 Jun 2023
- CoRR 2022
- Readers: Everyone
Reproducibility in biomedical natural language processing: A FAIR approach to what we need to know
Kevin Bretonnel Cohen, Anna M. Ripple, Asma Ben Abacha, Olivier Bodenreider, Orin Hargraves, Karin Verspoor, Pierre Zweigenbaum, Dina Demner-Fushman
- Published: 01 Jan 2021, Last Modified: 27 Jun 2023
- AMIA 2021
- Readers: Everyone
Feasibility of replacing the ICD-10-CM with the ICD-11 for morbidity coding: A content analysis
Kin Wah Fung, Julia Xu, Shannon McConnell-Lamptey, Donna Pickett, Olivier Bodenreider
- Published: 01 Jan 2021, Last Modified: 27 Jun 2023
- J. Am. Medical Informatics Assoc. 2021
- Readers: Everyone
Evaluating Biomedical BERT Models for Vocabulary Alignment at Scale in the UMLS Metathesaurus
Goonmeet Bajaj, Vinh Nguyen, Thilini Wijesiriwardene, Hong Yung Yip, Vishesh Javangula, Srinivasan Parthasarathy, Amit P. Sheth, Olivier Bodenreider
- Published: 01 Jan 2021, Last Modified: 27 Jun 2023
- CoRR 2021
- Readers: Everyone

View all 219 publications

Co-Authors

View all 317 co-authors