Richard Bonneau

Joined

July 2019

Names

Richard Bonneau

,

Richard A. Bonneau

Emails

****@nyu.edu (Confirmed)

Personal Links

Career & Education History

Full Professor

New York University (nyu.edu)

2005 – 2023

Advisors, Relations & Conflicts

No relations added

Expertise

No areas of expertise listed

Publications

OpenProteinSet: Training data for structural biology at scale
Gustaf Ahdritz, Nazim Bouatta, Sachin Kadyan, Lukas Jarosch, Dan Berenberg, Ian Fisk, Andrew Martin Watkins, Stephen Ra, Richard Bonneau, Mohammed AlQuraishi
- NeurIPS 2023 Datasets and Benchmarks Poster
- Readers: Everyone
Optimal tuning of weighted kNN- and diffusion-based methods for denoising single cell genomics data
Omar Mahmood, Andreas Tjärnberg, Christopher Jackson, Giuseppe-Antonio Saldi, Kyunghyun Cho, Lionel Christiaen, Richard Bonneau
- 15 May 2023
- OpenReview Archive Direct Upload
- Readers: Everyone
Masked graph modeling for molecule generation
Omar Mahmood, Elman Mansimov, Richard Bonneau, Kyunghyun Cho
- 12 May 2023
- OpenReview Archive Direct Upload
- Readers: Everyone
AbDiffuser: full-atom generation of in-vitro functioning antibodies
Karolis Martinkus, Jan Ludwiczak, WEI-CHING LIANG, Julien Lafrance-Vanasse, Isidro Hotzel, Arvind Rajpal, Yan Wu, Kyunghyun Cho, Richard Bonneau, Vladimir Gligorijevic, Andreas Loukas
- NeurIPS 2023 spotlight
- Readers: Everyone
Learning protein family manifolds with smoothed energy-based models
Nathan C. Frey, Dan Berenberg, Joseph Kleinhenz, Isidro Hotzel, Julien Lafrance-Vanasse, Ryan Lewis Kelly, Yan Wu, Arvind Rajpal, Stephen Ra, Richard Bonneau, Kyunghyun Cho, Andreas Loukas, Vladimir Gligorijevic, Saeed Saremi
- Published: 03 Mar 2023, Last Modified: 31 Mar 2023
- Physics4ML Spotlight
- Readers: Everyone
LEARNING PROTEIN FAMILY MANIFOLDS WITH SMOOTHED ENERGY-BASED MODELS
Nathan C. Frey, Dan Berenberg, Joseph Kleinhenz, Stephen Ra, Isidro Hotzel, Julien Lafrance-Vanasse, Ryan Lewis Kelly, Yan Wu, Arvind Rajpal, Richard Bonneau, Kyunghyun Cho, Andreas Loukas, Vladimir Gligorijevic, Saeed Saremi
- Published: 06 Mar 2023, Last Modified: 05 May 2023
- ICLR 2023 - MLDD Poster
- Readers: Everyone
OpenFold: Retraining AlphaFold2 yields new insights into its learning mechanisms and capacity for generalization
Gustaf Ahdritz, Nazim Bouatta, Sachin Kadyan, Qinghui Xia, William Gerecke, Timothy J O'Donnell, Dan Berenberg, Ian Fisk, Niccolò Zanichelli, Bo Zhang, Arkadiusz Nowaczynski, Bei Wang, Marta M Stepniewska-Dziubinska, Shang Zhang, Adegoke Ojewole, Murat Efe Guney, Stella Biderman, Andrew Martin Watkins, Stephen Ra, Pablo Ribalta Lorenzo et al. (8 additional authors not shown)
- 30 Jan 2023
- OpenReview Archive Direct Upload
- Readers: Everyone
A Pareto-optimal compositional energy-based model for sampling and optimization of protein sequences
Natasa Tagasovska, Nathan C. Frey, Andreas Loukas, Isidro Hotzel, Julien Lafrance-Vanasse, Ryan Lewis Kelly, Yan Wu, Arvind Rajpal, Richard Bonneau, Kyunghyun Cho, Stephen Ra, Vladimir Gligorijevic
- Published: 21 Oct 2022, Last Modified: 05 May 2023
- AI4Science Poster
- Readers: Everyone
PropertyDAG: Multi-objective Bayesian optimization of partially ordered, mixed-variable properties for biological sequence design
Ji Won Park, Samuel Don Stanton, Saeed Saremi, Andrew Martin Watkins, Henri Dwyer, Vladimir Gligorijevic, Richard Bonneau, Stephen Ra, Kyunghyun Cho
- Published: 21 Oct 2022, Last Modified: 05 May 2023
- AI4Science Poster
- Readers: Everyone
Estimating the Impact of Coordinated Inauthentic Behavior on Content Recommendations in Social Networks
Swapneel S Mehta, Atilim Gunes Baydin, Bogdan State, Richard Bonneau, Jonathan Nagler, Philip Torr
- Published: 11 Jul 2022, Last Modified: 05 May 2023
- AI4ABM 2022 Oral
- Readers: Everyone

View all 11 publications

Co-Authors

View all 60 co-authors