Richard Bonneau

VP ML for Drug Discovery, genentech

Joined

May 2023

Names

Richard Bonneau (Preferred)

Emails

****@gene.com (Confirmed)

Personal Links

Google Scholar

Career & Education History

VP ML for Drug Discovery

genentech (gene.com)

2021 – 2027

Advisors, Relations & Conflicts

No relations added

Expertise

No areas of expertise listed

Publications

GLM-Prior: A Genomic Language Model for Sequence-Derived Prior Knowledge in GRN Inference
Claudia Skok Gibbs, Angelica Chen, Richard Bonneau, Kyunghyun Cho
- NeurIPS 2025 2nd Workshop FM4LS Poster
- Readers: Everyone
SurfProp: A surface-based property prediction framework for antibody developability and screening
Pranav Rao, Henry Isaacson, Jennifer L. Hofmann, Darcy Davidson, Amy Wang, Andrew Martin Watkins, Richard Bonneau, Saeed Izadi, Jae Hyeon Lee
- GenBio 2025 Poster
- Readers: Everyone
AtoMAE: Learning Protein Structure Representations from Atomic Voxel Grids via Masked Autoencoders
Namuk Park, Pedro O. Pinheiro, Nathan C. Frey, Sidney L Lisanza, Andrew Martin Watkins, Arian Rokkum Jamasb, Matthieu Kirchmeyer, Richard Bonneau, Saeed Saremi, Vladimir Gligorijevic
- GenBio 2025 Poster
- Readers: Everyone
Ibex: Pan-immunoglobulin structure prediction
Frederic A Dreyer, Karolis Martinkus, Jan Ludwiczak, Brennan Abanades, Robert G Alberstein, Pranav Rao, Jae Hyeon Lee, Richard Bonneau, Andrew Martin Watkins, Franziska Seeger
- GenBio 2025 Poster
- Readers: Everyone
Unified all-atom molecule generation with neural fields
Matthieu Kirchmeyer, Pedro O. Pinheiro, Emma Willett, Karolis Martinkus, Joseph Kleinhenz, Emily K. Makowski, Andrew Martin Watkins, Vladimir Gligorijevic, Richard Bonneau, Saeed Saremi
- NeurIPS 2025 poster
- Readers: Everyone
All-Atom Protein Generation with Latent Diffusion
Amy X. Lu, Wilson Yan, Sarah A Robinson, Simon Kelow, Kevin K Yang, Vladimir Gligorijevic, Kyunghyun Cho, Richard Bonneau, Pieter Abbeel, Nathan C. Frey
- GEM
- Readers: Everyone
Guided Generation of B-cell Receptors with Conditional Walk-Jump Sampling
Taylor Joren, Sarah A Robinson, Homa MohammadiPeyhani, Sai Pooja Mahajan, Edith Lee, Stephen Lillington, Qixin Bei, Saeed Saremi, Jae Hyeon Lee, Richard Bonneau, Isidro Hotzel, Vladimir Gligorijevic, Simon Kelow, Nathan C. Frey
- ICLR 2025 Workshop LMRL
- Readers: Everyone
Guided Generation of B-cell Receptors with Conditional Walk-Jump Sampling
Taylor Joren, Sarah A Robinson, Homa MohammadiPeyhani, Sai Pooja Mahajan, Edith Lee, Stephen Lillington, Qixin Bei, Saeed Saremi, Jae Hyeon Lee, Richard Bonneau, Isidro Hotzel, Vladimir Gligorijevic, Simon Kelow, Nathan C. Frey
- GEM
- Readers: Everyone
Orchestrating Tool Ecosystem of Drug Discovery with Intention-Aware LLM Agents
Mingyu Derek Ma, Karina Zadorozhny, Jesse Swanson, Nathan C. Frey, Keunwoo Choi, Maksim Eremeev, Sabrina J Mielke, Wenmo Sun, Melody Liu, Jonathan Wickes, Vladimir Gligorijevic, Richard Bonneau, Henri Dwyer, Kyunghyun Cho, Stephen Ra
- ICLR 2025 Workshop AgenticAI Poster
- Readers: Everyone
Residue-level text conditioning for protein language model mutation effect prediction
Dan Berenberg, Nate Gruver, Alan Nawzad Amin, Peter Mørch Groth, Leo Chen, Harsh R. Srivastava, Pascal Notin, Debora Susan Marks, Andrew Gordon Wilson, Kyunghyun Cho, Richard Bonneau
- GEM
- Readers: Everyone

View all 19 publications

Co-Authors

View all 72 co-authors