Ruoxi Zhang

MS student, University of Pennsylvania, University of Pennsylvania

Joined

September 2024

Names

Ruoxi Zhang (Preferred)

Emails

****@fudan.edu.cn (Confirmed)

,

****@seas.upenn.edu (Confirmed)

Personal Links

Career & Education History

MS student

University of Pennsylvania, University of Pennsylvania (seas.upenn.edu)

Present

Undergrad student

Fudan University (fudan.edu.cn)

2020 – 2024

Advisors, Relations & Conflicts

No relations added

Expertise

No areas of expertise listed

Publications

CupOFLATTE: Coupled Objective-Guided Discrete Flows via Linker Assembly for Targeted PROTAC Engineering
Ziang Li, Ruoxi Zhang, Pranam Chatterjee
- GenBio 2026 Poster
- Readers: Everyone
CupOFMoCA: Coupled Objective-Guided Discrete Flows for Molecular Conjugate Assembly
Ruoxi Zhang, Jiatao Gu, Pranam Chatterjee
- ICLR 2026 DeLTa Workshop Poster
- Readers: Everyone
CupOFMoCA: Coupled Objective-Guided Discrete Flows for Molecular Conjugate Assembly
Ruoxi Zhang, Jiatao Gu, Pranam Chatterjee
- ReALM-GEN 2026 - ICLR 2026 Workshop
- Readers: Everyone
Multi-Objective Nanobody Design via Masked Discrete Diffusion with Simplex Refinement
Ruoxi Zhang, Pranam Chatterjee
- SPIGM @ NeurIPS
- Readers: Everyone
Multi-Objective Nanobody Design via Masked Discrete Diffusion with Simplex Refinement
Ruoxi Zhang, Pranam Chatterjee
- NeurIPS2025-AI4Science Poster
- Readers: Everyone
ProtRNA: A Protein-derived RNA Language Model by Cross-Modality Transfer Learning
Ruoxi Zhang, Ben Ma, Gang Xu, Jianpeng Ma
- ICLR 2025 AI4NA Poster
- Readers: Everyone
OPUS-GO: Unlocking Residue-level Insights from Sequence-level Annotations Using Biological Language Models
Gang Xu, Ying Lv, Ruoxi Zhang, Xinyuan Xia, Qinghua Wang, Jianpeng Ma
- GEM
- Readers: Everyone
STRIDE: A Tool-Assisted LLM Agent Framework for Strategic and Interactive Decision-Making
Chuanhao Li, Runhan Yang, Tiankai Li, Ruoxi Zhang, Milad Bafarassat, Kourosh Sharifi, Dirk Bergemann, Zhuoran Yang
- Submitted to ICLR 2025
- Readers: Everyone

Co-Authors