Samuel Sledzieski

Postdoc, Flatiron Institute

Joined

March 2024

Names

Samuel Sledzieski (Preferred)

Emails

****@mit.edu (Confirmed)

****@flatironinstitute.org (Confirmed)

****@gmail.com (Confirmed)

Personal Links

Career & Education History

Postdoc

Flatiron Institute (flatironinstitute.org)

2024 – Present

PhD student

Massachusetts Institute of Technology (mit.edu)

2019 – 2024

Advisors, Relations & Conflicts

Postdoc Advisor

Sonya M Hanson

2024 – Present

Postdoc Advisor

Olga Troyanskaya

2024 – Present

PhD Advisor

Bonnie Berger

2019 – 2024

Expertise

protein language models

2019 – Present

Publications

Reverse Distillation: Consistently Scaling Protein Language Model Representations
Darius Catrina, Christian Bepler, Samuel Sledzieski, Rohit Singh
- ICLR 2026 Poster
- Readers: Everyone
Decoding the Functional Interactome of Non-model Organisms with PHILHARMONIC
Samuel Sledzieski, Charlotte Versavel, Rohit Singh, Faith Ocitti, Kapil Devkota, Lokender Kumar, Polina Shpilker, Liza Roger, Jinkyu Yang, Nastassja Lewinski, Hollie Putnam, Bonnie Berger, Judith Klein-Seetharaman, Lenore Cowen
- RECOMB 2025
- Readers: Everyone
TT3D: Leveraging precomputed protein 3D sequence models to predict protein-protein interactions
Samuel Sledzieski, Kapil Devkota, Rohit Singh, Lenore Cowen, Bonnie Berger
- Bioinform. 2023
- Readers: Everyone
virDTL: Viral Recombination Analysis Through Phylogenetic Reconciliation and Its Application to Sarbecoviruses and SARS-CoV-2
Sumaira Zaman, Samuel Sledzieski, Bonnie Berger, Yi-Chieh Wu, Mukul S. Bansal
- J. Comput. Biol. 2023
- Readers: Everyone
Topsy-Turvy: integrating a global view into sequence-based PPI prediction
Rohit Singh, Kapil Devkota, Samuel Sledzieski, Bonnie Berger, Lenore Cowen
- Bioinform. 2022
- Readers: Everyone
TreeFix-TP: Phylogenetic Error-Correction for Infectious Disease Transmission Network Inference
Samuel Sledzieski, Chengchen Zhang, Ion I. Mandoiu, Mukul S. Bansal
- PSB 2021
- Readers: Everyone

Samuel Sledzieski

Names

Emails

Personal Links

Career & Education History

Advisors, Relations & Conflicts

Expertise

Publications

Reverse Distillation: Consistently Scaling Protein Language Model Representations

Decoding the Functional Interactome of Non-model Organisms with PHILHARMONIC

TT3D: Leveraging precomputed protein 3D sequence models to predict protein-protein interactions

virDTL: Viral Recombination Analysis Through Phylogenetic Reconciliation and Its Application to Sarbecoviruses and SARS-CoV-2

Topsy-Turvy: integrating a global view into sequence-based PPI prediction

TreeFix-TP: Phylogenetic Error-Correction for Infectious Disease Transmission Network Inference

Co-Authors