Shalin B. Mehta

Principal Researcher, Chan Zuckerberg Biohub Network

Joined

September 2024

Names

Shalin B. Mehta (Preferred)

Emails

****@czbiohub.org (Confirmed)

****@gmail.com (Confirmed)

****@ucsf.edu (Confirmed)

Personal Links

Homepage

Google Scholar

ORCID

Career & Education History

Principal Researcher

Chan Zuckerberg Biohub Network (czbiohub.org)

Present

Advisors, Relations & Conflicts

No relations added

Expertise

image segmentation

Present

representation learning

Present

image translation

2018 – Present

optics

2008 – Present

inverse algorithms

2008 – Present

Publications

WaveOrder: A differentiable wave-optical framework for scalable biological microscopy with diverse modalities
Shalin B. Mehta
- arXiv
- Readers: Everyone
Embedding cell state dynamics via contrastive learning of representations of 3D dynamic imaging datasets
Eduardo Hirata-Miyasaki, Soorya Pradeep, Ziwen Liu, Alishba Imran, Taylla Milena Theodoro, Ivan E. Ivanov, Sudip Khadka, See-Chi Lee, Michelle E Grunberg, Hunter Woosley, Madhura Bhave, Carolina Arias, Shalin B. Mehta
- NeurIPS 2025 Workshop Imageomics
- Readers: Everyone
DynaMorph: self-supervised learning of morphodynamic states of live cells
Zhenqin Wu, Bryant B. Chhun, Galina Popova, Syuan-Ming Guo, Chang Kim, Li-Hao Yeh, Tomasz Nowakowski, James Zou, Shalin B. Mehta
- Molecular Biology of the Cell
- Readers: Everyone
Robust virtual staining of landmark organelles
Ziwen Liu, Eduardo Hirata-Miyasaki, Soorya Pradeep, Johanna Rahm, Christian Foley, Talon Chandler, Ivan E. Ivanov, Hunter Woosley, Tiger Lao, Akilandeswari Balasubramanian, Rita Marreiros, Chad Liu, Manuel D Leonetti, Ranen Aviner, Carolina Arias, Adrian Jacobo, Shalin B. Mehta
- bioRxiv
- Readers: Everyone
Mantis: High-throughput 4D imaging and analysis of the molecular and physical architecture of cells
Ivan E. Ivanov, Eduardo Hirata-Miyasaki, Talon Chandler, Rasmi Cheloor-Kovilakam, Ziwen Liu, Soorya Pradeep, Chad Liu, Carolina Arias, Manuel D. Leonetti, Bo Huang, Shalin B. Mehta
- PNAS Nexus
- Readers: Everyone
Revealing architectural order with quantitative label-free imaging and deep learning
Syuan-Ming Guo, Li-Hao Yeh, Jenny Folkesson, Ivan E. Ivanov, Anitha Priya Krishnan, Matthew G Keefe, Ezzat Hashemi, David Shin, Nathan Cho, Manuel D Leonetti, May H Han, Tomasz J Nowakowski, Shalin B. Mehta
- eLife
- Readers: Everyone
Contrastive learning of cell state dynamics in response to perturbations
Soorya Pradeep, Alishba Imran, Ziwen Liu, Eduardo Hirata-Miyasaki, Taylla Milena Theodoro, Ivan E. Ivanov, Madhura Bhave, Sudip Khadka, Hunter Woosley, Carolina Arias, Shalin B. Mehta
- Submitted to ICLR 2025
- Readers: Everyone

Co-Authors

View all 39 co-authors

Shalin B. Mehta

Names

Emails

Personal Links

Career & Education History

Advisors, Relations & Conflicts

Expertise

Publications

WaveOrder: A differentiable wave-optical framework for scalable biological microscopy with diverse modalities

Embedding cell state dynamics via contrastive learning of representations of 3D dynamic imaging datasets

DynaMorph: self-supervised learning of morphodynamic states of live cells

Robust virtual staining of landmark organelles

Mantis: High-throughput 4D imaging and analysis of the molecular and physical architecture of cells

Revealing architectural order with quantitative label-free imaging and deep learning

Contrastive learning of cell state dynamics in response to perturbations

Co-Authors