Soha Hassoun

Full Professor, Tufts University

Joined

June 2019

Names

Soha Hassoun

Emails

****@cs.tufts.edu (Confirmed)

Personal Links

Career & Education History

Full Professor

Tufts University (tufts.edu)

1998 – Present

Advisors, Relations & Conflicts

No relations added

Expertise

systems biology

,

machine learning

Present

Publications

GRAPH GENERATIVE PRE-TRAINED TRANSFORMER
Xiaohui Chen, Yinkai Wang, Jiaxing He, Yuanqi Du, Soha Hassoun, Xiaolin Xu, Liping Liu
- ICLR 2025 DeLTa Workshop Poster
- Readers: Everyone
Large Language Model is Secretly a Protein Sequence Optimizer
Yinkai Wang, Jiaxing He, Yuanqi Du, Xiaohui Chen, Jianan Canal Li, Liping Liu, Xiaolin Xu, Soha Hassoun
- ICLR 2025 Workshop LMRL
- Readers: Everyone
Graph Generative Pre-trained Transformer
Xiaohui Chen, Yinkai Wang, Jiaxing He, Yuanqi Du, Soha Hassoun, Xiaolin Xu, Liping Liu
- ICML 2025 poster
- Readers: Everyone
MADGEN: Mass-Spec attends to De Novo Molecular generation
Yinkai Wang, Xiaohui Chen, Liping Liu, Soha Hassoun
- ICLR 2025 Poster
- Readers: Everyone
MassSpecGym: A benchmark for the discovery and identification of molecules
Roman Bushuiev, Anton Bushuiev, Niek F. de Jonge, Adamo Young, Fleming Kretschmer, Raman Samusevich, Janne Heirman, Fei Wang, Luke Zhang, Kai Dührkop, Marcus Ludwig, Nils A. Haupt, Apurva Kalia, Corinna Brungs, Robin Schmid, Russell Greiner, BO WANG, David Wishart, Liping Liu, Juho Rousu et al. (10 additional authors not shown)
- NeurIPS 2024 Track Datasets and Benchmarks Spotlight
- Readers: Everyone
On Separate Normalization in Self-supervised Transformers
Xiaohui Chen, Yinkai Wang, Yuanqi Du, Soha Hassoun, Liping Liu
- NeurIPS 2023 poster
- Readers: Everyone
Boost-RS: boosted embeddings for recommender systems and its application to enzyme-substrate interaction prediction
Xinmeng Li, Li-Ping Liu, Soha Hassoun
- Published: 01 Jan 2022, Last Modified: 09 May 2023
- Bioinform. 2022
- Readers: Everyone
Ensemble Spectral Prediction (ESP) Model for Metabolite Annotation
Xinmeng Li, Hao Zhu, Li-Ping Liu, Soha Hassoun
- Published: 01 Jan 2022, Last Modified: 09 May 2023
- CoRR 2022
- Readers: Everyone
Few-Shot Link Prediction with Domain-Agnostic Graph Embedding
Hao Zhu, Mahashweta Das, Mangesh Bendre, Fei Wang, Hao Yang, Soha Hassoun
- Published: 01 Jan 2022, Last Modified: 12 May 2023
- ICMLA 2022
- Readers: Everyone
Few-shot graph link prediction with domain adaptation
Hao Zhu, Mahashweta Das, Mangesh Bendre, Fei Wang, Hao Yang, Soha Hassoun
- Published: 28 Jan 2022, Last Modified: 13 Feb 2023
- ICLR 2022 Submitted
- Readers: Everyone

View all 83 publications

Co-Authors

View all 146 co-authors