Vladimir Gligorijevic

Researcher, Genentech

Joined

September 2022

Names

Vladimir Gligorijevic (Preferred)

Emails

****@gene.com (Confirmed)

Personal Links

Homepage

Google Scholar

DBLP

Career & Education History

Researcher

Genentech (gene.com)

2021 – Present

Researcher

Simons Foundation (simonsfoundation.org)

2017 – 2021

PhD student

Imperial College London (imperial.edu)

2013 – 2017

Advisors, Relations & Conflicts

No relations added

Expertise

Protein Design

Present

Language Models

Present

Deep Learning

Present

Protein Structure

Present

Graph Neural Networks

2019 – Present

Publications

AtoMAE: Learning Protein Structure Representations from Atomic Voxel Grids via Masked Autoencoders
Namuk Park, Pedro O. Pinheiro, Nathan C. Frey, Sidney L Lisanza, Andrew Martin Watkins, Arian Rokkum Jamasb, Matthieu Kirchmeyer, Richard Bonneau, Saeed Saremi, Vladimir Gligorijevic
- GenBio 2025 Poster
- Readers: Everyone
Unified all-atom molecule generation with neural fields
Matthieu Kirchmeyer, Pedro O. Pinheiro, Emma Willett, Karolis Martinkus, Joseph Kleinhenz, Emily K. Makowski, Andrew Martin Watkins, Vladimir Gligorijevic, Richard Bonneau, Saeed Saremi
- NeurIPS 2025 poster
- Readers: Everyone
All-Atom Protein Generation with Latent Diffusion
Amy X. Lu, Wilson Yan, Sarah A Robinson, Simon Kelow, Kevin K Yang, Vladimir Gligorijevic, Kyunghyun Cho, Richard Bonneau, Pieter Abbeel, Nathan C. Frey
- GEM
- Readers: Everyone
Guided Generation of B-cell Receptors with Conditional Walk-Jump Sampling
Taylor Joren, Sarah A Robinson, Homa MohammadiPeyhani, Sai Pooja Mahajan, Edith Lee, Stephen Lillington, Qixin Bei, Saeed Saremi, Jae Hyeon Lee, Richard Bonneau, Isidro Hotzel, Vladimir Gligorijevic, Simon Kelow, Nathan C. Frey
- ICLR 2025 Workshop LMRL
- Readers: Everyone
Guided Generation of B-cell Receptors with Conditional Walk-Jump Sampling
Taylor Joren, Sarah A Robinson, Homa MohammadiPeyhani, Sai Pooja Mahajan, Edith Lee, Stephen Lillington, Qixin Bei, Saeed Saremi, Jae Hyeon Lee, Richard Bonneau, Isidro Hotzel, Vladimir Gligorijevic, Simon Kelow, Nathan C. Frey
- GEM
- Readers: Everyone
Orchestrating Tool Ecosystem of Drug Discovery with Intention-Aware LLM Agents
Mingyu Derek Ma, Karina Zadorozhny, Jesse Swanson, Nathan C. Frey, Keunwoo Choi, Maksim Eremeev, Sabrina J Mielke, Wenmo Sun, Melody Liu, Jonathan Wickes, Vladimir Gligorijevic, Richard Bonneau, Henri Dwyer, Kyunghyun Cho, Stephen Ra
- ICLR 2025 Workshop AgenticAI Poster
- Readers: Everyone
Generalists vs. Specialists: Evaluating LLMs on Highly-Constrained Biophysical Sequence Optimization Tasks
Angelica Chen, Samuel Don Stanton, Frances Ding, Robert G Alberstein, Andrew Martin Watkins, Richard Bonneau, Vladimir Gligorijevic, Kyunghyun Cho, Nathan C. Frey
- ICML 2025 poster
- Readers: Everyone
LLMs are Highly-Constrained Biophysical Sequence Optimizers
Angelica Chen, Samuel Don Stanton, Robert G Alberstein, Andrew Martin Watkins, Richard Bonneau, Vladimir Gligorijevic, Kyunghyun Cho, Nathan C. Frey
- AIDrugX Spotlight
- Readers: Everyone
Generating All-Atom Protein Structure from Sequence-Only Training Data
Amy X. Lu, Wilson Yan, Vladimir Gligorijevic, Kyunghyun Cho, Richard Bonneau, Kevin K Yang, Pieter Abbeel, Nathan C. Frey
- Submitted to ICLR 2025
- Readers: Everyone
Compressing the Latent Space of Single-Sequence Protein Predictors for Multimodal Generation
Amy X. Lu, Wilson Yan, Vladimir Gligorijevic, Pieter Abbeel, Kevin K Yang, Nathan C. Frey
- AccMLBio Poster
- Readers: Everyone

View all 38 publications

Co-Authors

View all 70 co-authors