Yasin Bakis

Principal Researcher, Ecology and Evolutionary Biology, Tulane University

Joined

November 2022

Names

Yasin Bakis (Preferred)

Yasin Bakış

Emails

****@tulane.edu (Confirmed)

****@gmail.com (Confirmed)

****@ibu.edu.tr (Confirmed)

Personal Links

Google Scholar

DBLP

ORCID

Career & Education History

Principal Researcher

Ecology and Evolutionary Biology, Tulane University (tulane.edu)

2019 – Present

Advisors, Relations & Conflicts

Coauthor

Jane Greenberg

2019 – Present

PhD Advisor

Ugur Sezerman

2006 – 2013

Expertise

Machine Learning

2019 – Present

Biodiversity Informatics

2001 – Present

Publications

Hierarchical Conditioning of Diffusion Models Using Tree-of-Life for Studying Species Evolution
Mridul Khurana, Arka Daw, M. Maruf, Josef Uyeda, Wasila Dahdul, Caleb Patrick Charpentier, Yasin Bakis, Henry Bart, Paula Mabee, Hilmar Lapp, James Balhoff, Wei-Lun Chao, Charles V. Stewart, Tanya Berger-Wolf, Anuj Karpatne
- NeurIPS 2025 Workshop Imageomics
- Readers: Everyone
Hierarchical Conditioning of Diffusion Models Using Tree-of-Life for Studying Species Evolution
Mridul Khurana, Arka Daw, M. Maruf, Josef Uyeda, Wasila M Dahdul, Caleb Patrick Charpentier, Yasin Bakis, Henry Bart, Paula Mabee, Hilmar Lapp, James Balhoff, Wei-Lun Chao, Charles Stewart, Tanya Berger-Wolf, Anuj Karpatne
- ECCV 2024
- Readers: Everyone
Computational metadata generation methods for biological specimen image collections
Kevin Karnani, Joel Pepper, Yasin Bakis, Xiaojun Wang, Henry L. Bart Jr., David E. Breen, Jane Greenberg
- Int. J. Digit. Libr. 2024
- Readers: Everyone
VLM4Bio: A Benchmark Dataset to Evaluate Pretrained Vision-Language Models for Trait Discovery from Biological Images
M. Maruf, Arka Daw, Kazi Sajeed Mehrab, Harish Babu Manogaran, Abhilash Neog, Medha Sawhney, Mridul Khurana, James Balhoff, Yasin Bakis, Bahadir Altintas, Matthew J Thompson, Elizabeth G Campolongo, Josef Uyeda, Hilmar Lapp, Henry Bart, Paula Mabee, Yu Su, Wei-Lun Chao, Charles Stewart, Tanya Berger-Wolf et al. (2 additional authors not shown)
- NeurIPS 2024 Track Datasets and Benchmarks Poster
- Readers: Everyone
Hierarchical Conditioning of Diffusion Models Using Tree-of-Life for Studying Species Evolution
Mridul Khurana, Arka Daw, M. Maruf, Josef C. Uyeda, Wasila M. Dahdul, Caleb Charpentier, Yasin Bakis, Henry L. Bart Jr., Paula M. Mabee, Hilmar Lapp, James P. Balhoff, Wei-Lun Chao, Charles V. Stewart, Tanya Y. Berger-Wolf, Anuj Karpatne
- CoRR 2024
- Readers: Everyone
VLM4Bio: A Benchmark Dataset to Evaluate Pretrained Vision-Language Models for Trait Discovery from Biological Images
M. Maruf, Arka Daw, Kazi Sajeed Mehrab, Harish Babu Manogaran, Abhilash Neog, Medha Sawhney, Mridul Khurana, James P. Balhoff, Yasin Bakis, Bahadir Altintas, Matthew J. Thompson, Elizabeth G. Campolongo, Josef C. Uyeda, Hilmar Lapp, Henry L. Bart Jr., Paula M. Mabee, Yu Su, Wei-Lun Chao, Charles V. Stewart, Tanya Y. Berger-Wolf et al. (2 additional authors not shown)
- CoRR 2024
- Readers: Everyone
Fish-Vista: A Multi-Purpose Dataset for Understanding & Identification of Traits from Images
Kazi Sajeed Mehrab, M. Maruf, Arka Daw, Harish Babu Manogaran, Abhilash Neog, Mridul Khurana, Bahadir Altintas, Yasin Bakis, Elizabeth G. Campolongo, Matthew J. Thompson, Xiaojun Wang, Hilmar Lapp, Wei-Lun Chao, Paula M. Mabee, Henry L. Bart Jr., Wasila M. Dahdul, Anuj Karpatne
- CoRR 2024
- Readers: Everyone
Discovering Novel Biological Traits From Images Using Phylogeny-Guided Neural Networks
Mohannad Elhamod, Mridul Khurana, Harish Babu Manogaran, Josef C. Uyeda, Meghan A. Balk, Wasila M. Dahdul, Yasin Bakis, Henry L. Bart Jr., Paula M. Mabee, Hilmar Lapp, James P. Balhoff, Caleb Charpentier, David Carlyn, Wei-Lun Chao, Charles V. Stewart, Daniel I. Rubenstein, Tanya Y. Berger-Wolf, Anuj Karpatne
- Published: 01 Jan 2023, Last Modified: 27 Sept 2023
- KDD 2023
- Readers: Everyone
Discovering Novel Biological Traits From Images Using Phylogeny-Guided Neural Networks
Mohannad Elhamod, Mridul Khurana, Harish Babu Manogaran, Josef C. Uyeda, Meghan A. Balk, Wasila M. Dahdul, Yasin Bakis, Henry L. Bart Jr., Paula M. Mabee, Hilmar Lapp, James P. Balhoff, Caleb Charpentier, David Carlyn, Wei-Lun Chao, Charles V. Stewart, Daniel I. Rubenstein, Tanya Y. Berger-Wolf, Anuj Karpatne
- Published: 01 Jan 2023, Last Modified: 06 Feb 2024
- CoRR 2023
- Readers: Everyone
Toward a Flexible Metadata Pipeline for Fish Specimen Images
Dom Jebbia, Xiaojun Wang, Yasin Bakis, Henry L. Bart Jr., Jane Greenberg
- Published: 01 Jan 2022, Last Modified: 05 Mar 2024
- CoRR 2022
- Readers: Everyone

View all 16 publications

Co-Authors

View all 54 co-authors