Youjun Xu

Joined

May 2021

Names

Youjun Xu (Preferred)

Emails

****@pku.edu.cn (Confirmed)

****@bytedance.com (Confirmed)

Personal Links

Homepage

DBLP

ORCID

Career & Education History

Researcher

Project Voyager team, ByteDance Inc. (bytedance.com)

2024 – 2025

Postdoc

CCME, Peking University (pku.edu.cn)

2019 – 2021

PhD student

AAIS, Peking University (pku.edu.cn)

2014 – 2019

Advisors, Relations & Conflicts

PhD Advisor

Luhua Lai

2014 – 2019

PhD Advisor

Jianfeng Pei

2014 – 2019

Expertise

AI for science

2014 – 2025

Publications

PoseX: AI Defeats Physics-based Methods on Protein Ligand Cross-Docking
Yize Jiang, Xinze Li, Yuanyuan Zhang, Jin Han, Youjun Xu, Ayush Pandit, ZAIXI ZHANG, Mengdi Wang, Mengyang Wang, Chong Liu, Guang Yang, Yejin Choi, Yingzhou Lu, Wu-Jun Li, Tianfan Fu, Fang Wu, Junhong Liu
- ICLR 2026 Poster
- Readers: Everyone
PoseX: AI Defeats Physics-based Methods on Protein Ligand Cross-Docking
Yize Jiang, Xinze Li, Yuanyuan Zhang, Jin Han, Youjun Xu, Ayush Pandit, ZAIXI ZHANG, Mengdi Wang, Mengyang Wang, Chong Liu, Guang Yang, Yejin Choi, Wu-Jun Li, Tianfan Fu, Fang Wu, Junhong Liu
- Submitted to NeurIPS 2025 Datasets and Benchmarks Track
- Readers: Everyone
Exploration on learning molecular docking with deep learning models
Qin Xie, Wei Ma, Jianhang Zhang, Shiliang Li, Xiaobing Deng, Youjun Xu, Weilin Zhang
- Quant. Biol. 2023
- Readers: Everyone
Prediction of liquid-liquid phase separating proteins using machine learning
Xiaoquan Chu, Tanlin Sun, Qian Li, Youjun Xu, Zhuqing Zhang, Luhua Lai, Jianfeng Pei
- BMC Bioinform. 2022
- Readers: Everyone
MolMiner: You Only Look Once for Chemical Structure Recognition
Youjun Xu, Jinchuan Xiao, Chia-Han Chou, Jianhang Zhang, Jintao Zhu, Qiwan Hu, Hemin Li, Ningsheng Han, Bingyu Liu, Shuaipeng Zhang, Jinyu Han, Zhen Zhang, Shuhao Zhang, Weilin Zhang, Luhua Lai, Jianfeng Pei
- J. Chem. Inf. Model. 2022
- Readers: Everyone
Uncovering the Dominant Motion Modes of Allosteric Regulation Improves Allosteric Site Prediction
Juan Xie, Shiwei Wang, Youjun Xu, Minghua Deng, Luhua Lai
- 2022 (modified: 22 Nov 2022)
- J. Chem. Inf. Model. 2022
- Readers: Everyone
A transferable deep learning approach to fast screen potential antiviral drugs against SARS-CoV-2
Shiwei Wang, Qi Sun, Youjun Xu, Jianfeng Pei, Luhua Lai
- Briefings Bioinform. 2021
- Readers: Everyone
CavityPlus: a web server for protein cavity detection with pharmacophore modelling, allosteric site identification and covalent ligand binding ability prediction
Youjun Xu, Shiwei Wang, Qiwan Hu, Shuaishi Gao, Xiaomin Ma, Weilin Zhang, Yihang Shen, Fangjin Chen, Luhua Lai, Jianfeng Pei
- 2018 (modified: 24 Apr 2023)
- Nucleic Acids Res. 2018
- Readers: Everyone
Deep Learning Based Regression and Multiclass Models for Acute Oral Toxicity Prediction with Automatic Chemical Feature Extraction
Youjun Xu, Jianfeng Pei, Luhua Lai
- J. Chem. Inf. Model. 2017
- Readers: Everyone
An Algorithm Solving SAT Problem Based on Splitting Rule and Extension Rule
Youjun Xu
- J. Inf. Process. Syst. 2017
- Readers: Everyone

View all 12 publications

Co-Authors

View all 48 co-authors