ICML 2024 Workshop AccMLBio Submissions

MiniMol: A Parameter-Efficient Foundation Model for Molecular Learning
Kerstin Klaser, Blazej Banaszewski, Samuel Maddrell-Mander, Callum McLean, Luis Müller, Ali Parviz, Shenyang Huang, Andrew W Fitzgibbon
- Published: 17 Jun 2024, Last Modified: 25 Jul 2024
- AccMLBio Spotlight
- Readers: Everyone
Training Compute-Optimal Protein Language Models
Xingyi Cheng, Bo Chen, Pan Li, Jing Gong, Jie Tang, Le Song
- Published: 17 Jun 2024, Last Modified: 20 Jul 2024
- AccMLBio Spotlight
- Readers: Everyone
A generative foundation model for antibody sequence understanding
Justin Barton, Aretas Gaspariunas, David A Yadin, Jorge Dias, Francesca L Nice, Danielle H Minns, Olivia Snudden, Chelsea Povall, Sara Valle Tomas, Harry Dobson, James H R Farmery, Jinwoo Leem, Jacob D Galson
- Published: 17 Jun 2024, Last Modified: 13 Jul 2024
- AccMLBio Poster
- Readers: Everyone
Enhancing Single-Cell VAE Latent Space via Semi-Supervision
Meichen Gong, Konstantin Ivanov, Merja Heinäniemi, Ville Hautamaki
- Published: 17 Jun 2024, Last Modified: 17 Jul 2024
- AccMLBio Poster
- Readers: Everyone
Cramming Protein Language Model Training in 24 GPU Hours
Nathan C. Frey, Taylor Joren, Aya Abdelsalam Ismail, Allen Goodman, Richard Bonneau, Kyunghyun Cho, Vladimir Gligorijevic
- Published: 17 Jun 2024, Last Modified: 24 Jul 2024
- AccMLBio Spotlight
- Readers: Everyone
High-Resolution In Silico Painting with Generative Models
Trang Le
- Published: 17 Jun 2024, Last Modified: 23 Jul 2024
- AccMLBio Poster
- Readers: Everyone
Fine-tuning the ESM2 protein language model to understand the functional impact of missense variants
Ali Saadat, Jacques Fellay
- Published: 17 Jun 2024, Last Modified: 17 Jul 2024
- AccMLBio Poster
- Readers: Everyone
Pre-training of Single-cell Language Models through Genetic Pathway Learning
Xuxi Chen, Zhangyang Wang, Marinka Zitnik, Manolis Kellis, Tianlong Chen
- Published: 17 Jun 2024, Last Modified: 25 Jul 2024
- AccMLBio Poster
- Readers: Everyone
One-Versus-Others Attention: Scalable Multimodal Integration for Biomedical Data
Michal Golovanevsky, Eva Schiller, Akira A Nair, Ritambhara Singh, Carsten Eickhoff
- Published: 17 Jun 2024, Last Modified: 25 Jul 2024
- AccMLBio Spotlight
- Readers: Everyone
Towards Generalizable Particle Picking in Cryo-EM Images by Leveraging Masked AutoEncoder
Andreas Zamanos, Panagiotis Koromilas, Giorgos Bouritsas, Panagiotis L. Kastritis, Yannis Panagakis
- Published: 17 Jun 2024, Last Modified: 25 Jul 2024
- AccMLBio Poster
- Readers: Everyone
ABodyBuilder3: Improved and scalable antibody structure predictions
Henry Kenlay, Frederic A Dreyer, Daniel Cutting, Daniel Allen Nissley, Charlotte Deane
- Published: 17 Jun 2024, Last Modified: 12 Jul 2024
- AccMLBio Poster
- Readers: Everyone
BioinformaticsBench: A collaboratively built large language model benchmark for Bioinformatics reasoning
Varuni Sarwal, Seungmo Lee, Rosemary He, Aingela Kattapuram, xiaoxuan wang, Eleazar Eskin, Wei Wang, Serghei Mangul
- Published: 17 Jun 2024, Last Modified: 17 Jun 2024
- AccMLBio Poster
- Readers: Everyone