ICLR 2024 Workshop MLGenX Submissions

Disentanglement via Mechanism Sparsity by Replaying Realizations of the Past
Soroor Hediyeh-zadeh, Tom Fischer, Fabian J Theis
- Published: 04 Mar 2024, Last Modified: 07 May 2024
- MLGenX 2024 Poster
- Readers: Everyone
BioDiscoveryAgent: An AI Agent for Designing Genetic Perturbation Experiments
Yusuf H Roohani, Jian Vora, Qian Huang, Percy Liang, Jure Leskovec
- Published: 04 Mar 2024, Last Modified: 28 Apr 2024
- MLGenX 2024 Spotlight
- Readers: Everyone
Enhancing generative perturbation models with LLM-informed gene embeddings
Kaspar Märtens, Rory Donovan-Maiye, Jesper Ferkinghoff-Borg
- Published: 04 Mar 2024, Last Modified: 27 Apr 2024
- MLGenX 2024 Poster
- Readers: Everyone
cellFlow: a generative flow-based model for single-cell count data
Alessandro Palma, Till Richter, Hanyi Zhang, Andrea Dittadi, Fabian J Theis
- Published: 04 Mar 2024, Last Modified: 27 Apr 2024
- MLGenX 2024 Poster
- Readers: Everyone
Recurrent memory augmentation of GENA-LM improves performance on long DNA sequence tasks
Yuri Kuratov, Aleksei Shmelev, Veniamin Fishman, Olga Kardymon, Mikhail Burtsev
- Published: 04 Mar 2024, Last Modified: 27 Apr 2024
- MLGenX 2024 Poster
- Readers: Everyone
DNA language models identify variants predictive across the human phenome
Benjamin Wild, Julius Upmeier zu Belzen, Luis Herrmann, Paul Kittner, Roland Eils
- Published: 04 Mar 2024, Last Modified: 27 Apr 2024
- MLGenX 2024 Poster
- Readers: Everyone
Season combinatorial intervention predictions with Salt & Peper
Thomas Gaudelet, Alice Del Vecchio, Eli M Carrami, Juliana Cudini, Chantriolnt-Andreas Kapourani, Caroline Uhler, Lindsay Edwards
- Published: 04 Mar 2024, Last Modified: 07 May 2024
- MLGenX 2024 Spotlight
- Readers: Everyone
ROBUST SYMBOLIC REGRESSION FOR NETWORK TRAJECTORY INFERENCE
Ramzi Dakhmouche, Ivan Lunati, Hossein Gorji
- Published: 04 Mar 2024, Last Modified: 24 Apr 2024
- MLGenX 2024 Poster
- Readers: Everyone
Multi-Resolution Graph Diffusion
Mahdi Karami, Igor Krawczuk, Volkan Cevher
- Published: 04 Mar 2024, Last Modified: 07 May 2024
- MLGenX 2024 Poster
- Readers: Everyone
NICHEVI: A PROBABILISTIC FRAMEWORK TO EMBED CELLULAR INTERACTION IN SPATIAL TRANSCRIPTOMICS
Nathan Levy, Florian Ingelfinger, Can Ergen-Behr, Boaz Nadler
- Published: 04 Mar 2024, Last Modified: 28 Apr 2024
- MLGenX 2024 Poster
- Readers: Everyone
DARKIN: A zero-shot classification benchmark and an evaluation of protein language models
Emine Ayşe Sunar, Zeynep Işık, Mert Pekey, Ramazan Gokberk Cinbis, Oznur Tastan
- Published: 04 Mar 2024, Last Modified: 08 May 2024
- MLGenX 2024 Poster
- Readers: Everyone
Evaluating Spatial Encoding Strategies for Cell Type Annotation with Spatial Omics Data
Merel Kuijs, Alma Andersson, Ehsan Hajiramezanali, Tommaso Biancalani, Aicha BenTaieb
- Published: 04 Mar 2024, Last Modified: 27 Apr 2024
- MLGenX 2024 Poster
- Readers: Everyone
Unveiling Zero Shot Prediction for Gene Attributes Through Interpretable AI
Ala Jararweh, Oladimeji Macaulay, David Arredondo, Olufunmilola Oyebamiji, Luis E Tafoya, Kushal Virupakshappa, Avinash Sahu
- Published: 04 Mar 2024, Last Modified: 24 Apr 2024
- MLGenX 2024 Poster
- Readers: Everyone
Joint Embedding of Transcriptomes and Text Enables Interactive Single-Cell RNA-seq Data Exploration via Natural Language
Moritz Schaefer, Peter Peneder, Daniel Malzl, Anna Hakobyan, Varun S. Sharma, Thomas Krausgruber, Jörg Menche, Eleni Tomazou, Christoph Bock
- Published: 04 Mar 2024, Last Modified: 24 Apr 2024
- MLGenX 2024 Spotlight
- Readers: Everyone
Propensity Score Alignment of Unpaired Multimodal Data
Johnny Xi, Jason Hartford
- Published: 04 Mar 2024, Last Modified: 19 Apr 2024
- MLGenX 2024 Spotlight
- Readers: Everyone
Scalable Amortized GPLVMs for Single Cell Transcriptomics Data
Sarah Zhao, Aditya Ravuri, Vidhi Lalchand, Neil D Lawrence
- Published: 04 Mar 2024, Last Modified: 07 May 2024
- MLGenX 2024 Poster
- Readers: Everyone
Active learning to discover pairwise genetic interactions via representation learning
Moksh Jain, Alisandra Kaye Denton, Shawn T. Whitfield, Aniket Rajiv Didolkar, Berton Earnshaw, Jason Hartford
- Published: 04 Mar 2024, Last Modified: 07 May 2024
- MLGenX 2024 Poster
- Readers: Everyone
A mechanistically interpretable neural-network architecture for discovery of regulatory genomics
Alex M Tseng, Gökcen Eraslan, Nathaniel Lee Diamant, Tommaso Biancalani, Gabriele Scalia
- Published: 04 Mar 2024, Last Modified: 15 May 2024
- MLGenX 2024 Spotlight
- Readers: Everyone
Multi-Modal Contrastive Learning for Proteins by Combining Domain-Informed Views
Haotian Xu, Yuning You, Yang Shen
- Published: 04 Mar 2024, Last Modified: 27 Apr 2024
- MLGenX 2024 Poster
- Readers: Everyone
Contrastive Poincaré Maps for single-cell data analysis
Nithya Bhasker, Hattie Chung, Louis Boucherie, Vladislav Kim, Stefanie Speidel, Melanie Weber
- Published: 04 Mar 2024, Last Modified: 27 Apr 2024
- MLGenX 2024 Poster
- Readers: Everyone
AcceleratedLiNGAM: Learning causal DAGs at the speed of GPUs
Victor Akinwande, J Zico Kolter
- Published: 04 Mar 2024, Last Modified: 22 Apr 2024
- MLGenX 2024 Poster
- Readers: Everyone
Biologically Interpretable VAE with Supervision for Transcriptomics Data Under Ordinal Perturbations
Seyednami Niyakan, Xihaier Luo, Byung-Jun Yoon, Xiaoning Qian
- Published: 04 Mar 2024, Last Modified: 07 May 2024
- MLGenX 2024 Poster
- Readers: Everyone
Optimizing Genetically-Driven Synaptogenesis
Tommaso Boccato, Matteo Ferrante, Nicola Toschi
- Published: 04 Mar 2024, Last Modified: 27 Apr 2024
- MLGenX 2024 Poster
- Readers: Everyone
DNA-DIFFUSION: LEVERAGING GENERATIVE MODELS FOR CONTROLLING CHROMATIN ACCESSIBILITY AND GENE EXPRESSION VIA SYNTHETIC REGULATORY ELEMENTS
Simon Senan, Aniketh Janardhan Reddy, Zach Nussbaum, Aaron Wenteler, Matei Bejan, Michael I Love, Wouter Meuleman, Luca Pinello
- Published: 04 Mar 2024, Last Modified: 10 May 2024
- MLGenX 2024 Spotlight
- Readers: Everyone
sc-OTGM: Single-Cell Perturbation Modeling by Solving Optimal Mass Transport on the Manifold of Gaussian Mixtures
Andac Demir, Elizaveta Solovyeva, Jamie Boylan, Mei Xiao, Fabrizio Serluca, Sebastian Hoersch, Murthy V Devarakonda, Bulent Kiziltan
- Published: 04 Mar 2024, Last Modified: 29 Apr 2024
- MLGenX 2024 Poster
- Readers: Everyone