ICLR 2025 Workshop LMRL Submissions

Target localization in cell-based image analysis and disease diagnosis
Noman Saffat Sajid, Md. Shahriar Karim
- Published: 06 Mar 2025, Last Modified: 21 Jul 2025
- ICLR 2025 Workshop LMRL
- Readers: Everyone
Benchmarking Sample Representations from Single-Cell Data: Metrics for Biologically Meaningful Embeddings
Vladimir Shitov, Mohammad Moghareh Dehkordi, Malte D Luecken
- Published: 06 Mar 2025, Last Modified: 21 Jul 2025
- ICLR 2025 Workshop LMRL
- Readers: Everyone
Ligand-Conditioned Binding Site Prediction Using Contrastive Geometric Learning
Lisa Schneckenreiter, Sohvi Luukkonen, Lukas Friedrich, Daniel Kuhn, Günter Klambauer
- Published: 06 Mar 2025, Last Modified: 21 Jul 2025
- ICLR 2025 Workshop LMRL
- Readers: Everyone
AI-Powered Virtual Tissues from Spatial Proteomics for Clinical Diagnostics and Biomedical Discovery
Johann Wenckstern, Eeshaan Jain, Kiril Vasilev, Matteo Pariset, Andreas Wicki, Gabriele Gut, Charlotte Bunne
- Published: 06 Mar 2025, Last Modified: 21 Jul 2025
- ICLR 2025 Workshop LMRL
- Readers: Everyone
DiffGraphTrans: A Differential Attention-Based Approach for Extracting Meaningful Features of Drug Combinations
Bingzheng Wu, Qi Wang
- Published: 06 Mar 2025, Last Modified: 21 Jul 2025
- ICLR 2025 Workshop LMRL
- Readers: Everyone
Unsupervised Deep Disentangled Representation of Single-Cell Omics with DRVI
Amir Ali Moinfar, Fabian J Theis
- Published: 06 Mar 2025, Last Modified: 21 Jul 2025
- ICLR 2025 Workshop LMRL
- Readers: Everyone
Fractional Brownian Bridges for Aligned Data
Gabriel Nobis, Arina Belova, Maximilian Springenberg, Rembert Daems, Christoph Knochenhauer, Manfred Opper, Tolga Birdal, Wojciech Samek
- Published: 06 Mar 2025, Last Modified: 21 Jul 2025
- ICLR 2025 Workshop LMRL
- Readers: Everyone
NOLAN: CONSTRUCTING GRAPH REPRESENTATION OF TISSUE STRUCTURE WITH SELF-SUPERVISED LEARNING
Artemy Bakulin, Nathan Levy, Can Ergen, Jonas Maaskola, Nir Yosef
- Published: 06 Mar 2025, Last Modified: 21 Jul 2025
- ICLR 2025 Workshop LMRL
- Readers: Everyone
Self-supervised Learning for Encoding Between-Subject Information in Clinical EEG
Sam Gijsen, Kerstin Ritter
- Published: 06 Mar 2025, Last Modified: 21 Jul 2025
- ICLR 2025 Workshop LMRL
- Readers: Everyone
Interpretable Self-Supervised Prototype Learning for Single-Cell Transcriptomics
Fatemeh S. Hashemi Golpayegani, Till Richter, Alejandro Tejada Lapuerta, Lennard Halle, Mohammad Lotfollahi, Fabian J Theis
- Published: 06 Mar 2025, Last Modified: 21 Jul 2025
- ICLR 2025 Workshop LMRL
- Readers: Everyone
Transformer-Based Integrative Patient Representations from Single-Cell RNA Data
Benedikt von Querfurth, Johannes Lohmöller, Jan Pennekamp, Tore Bleckwehl, Rafael Kramann, Klaus Wehrle, Sikander Hayat
- Published: 06 Mar 2025, Last Modified: 21 Jul 2025
- ICLR 2025 Workshop LMRL
- Readers: Everyone
MODIS: Multi-Omics Data Integration for small and unpaired datasets
Daniel Lepe-Soltero, Thierry Artières, Anaïs Baudot, Paul Villoutreix
- Published: 06 Mar 2025, Last Modified: 21 Jul 2025
- ICLR 2025 Workshop LMRL
- Readers: Everyone
2DE: a probabilistic method for differential expression across niches in spatial transcriptomics data
Nathan Levy, Florian Ingelfinger, Artemy Bakulin, Giacomo Cinnirella, Pierre Boyeau, Can Ergen, Nir Yosef
- Published: 06 Mar 2025, Last Modified: 21 Jul 2025
- ICLR 2025 Workshop LMRL
- Readers: Everyone
Identifying Critical Phases for Disease Onset with Sparse Haematological Biomarkers
Andrea Zerio, Maya Bechler-Speicher, Tine Jess, Aleksejs Sazonovs
- Published: 06 Mar 2025, Last Modified: 21 Jul 2025
- ICLR 2025 Workshop LMRL
- Readers: Everyone
Multi-Modal Representation learning for molecules
Muhammad Arslan Masood, Markus Heinonen, Samuel Kaski
- Published: 06 Mar 2025, Last Modified: 21 Jul 2025
- ICLR 2025 Workshop LMRL
- Readers: Everyone
Mutagenic: An Embedding-Based Approach to Protein Masking for Functional Redesign
Robin Pan, Richard Yuxuan Zhu, Vihan Lakshman, Fiona Qu
- Published: 06 Mar 2025, Last Modified: 21 Jul 2025
- ICLR 2025 Workshop LMRL
- Readers: Everyone
Towards Interpretable Protein Structure Prediction with Sparse Autoencoders
Nithin Parsan, David J Yang, John Jingxuan Yang
- Published: 06 Mar 2025, Last Modified: 21 Jul 2025
- ICLR 2025 Workshop LMRL
- Readers: Everyone
Extending Prot2Token: Aligning Protein Language Models for Unified and Diverse Protein Prediction Tasks
Mahdi Pourmirzaei, Ye Han, Farzaneh Esmaili, Mohammadreza Pourmirzaeioliaei, Salhuldin Alqarghuli, Kai Chen, Dong Xu
- Published: 06 Mar 2025, Last Modified: 21 Jul 2025
- ICLR 2025 Workshop LMRL
- Readers: Everyone
Simulation-Free Structure Learning For Stochastic Dynamics
Noah El Rimawi-Fine, Adam Stecklov, Lucas Nelson, Alexander Tong, Mathieu Blanchette, Stephen Y. Zhang, Lazar Atanackovic
- Published: 06 Mar 2025, Last Modified: 21 Jul 2025
- ICLR 2025 Workshop LMRL
- Readers: Everyone
Unsupervised Whole-Genome Representation Learning Captures Bacterial Phenotypes
Cameron Dufault, Alan M Moses
- Published: 06 Mar 2025, Last Modified: 21 Jul 2025
- ICLR 2025 Workshop LMRL
- Readers: Everyone
Gumbel-Softmax Score and Flow Matching for Discrete Biological Sequence Generation
Sophia Tang, Yinuo Zhang, Alexander Tong, Pranam Chatterjee
- Published: 06 Mar 2025, Last Modified: 18 Apr 2025
- ICLR 2025 Workshop LMRL Withdrawn Submission
- Readers: Everyone
From Mechanistic Interpretability to Mechanistic Biology: Training, Evaluating, and Interpreting Sparse Autoencoders on Protein Language Models
Etowah Adams, Liam Bai, Minji Lee, Yiyang Yu, Mohammed AlQuraishi
- Published: 06 Mar 2025, Last Modified: 21 Jul 2025
- ICLR 2025 Workshop LMRL
- Readers: Everyone
Adaptive Discrete Tokenization of Electrocardiograms for Clinical Applications
Rohan Banerjee, Jacques Delfrate, Robert Avram
- Published: 06 Mar 2025, Last Modified: 21 Jul 2025
- ICLR 2025 Workshop LMRL
- Readers: Everyone
Curly Flow Matching for Learning Non-gradient Field Dynamics
Katarina Petrović, Lazar Atanackovic, Kacper Kapuśniak, Michael M. Bronstein, Joey Bose, Alexander Tong
- Published: 06 Mar 2025, Last Modified: 21 Jul 2025
- ICLR 2025 Workshop LMRL
- Readers: Everyone
Implicit Neural Representations of Molecular Vector-Valued Functions
Jirka Lhotka, Daniel Probst
- Published: 06 Mar 2025, Last Modified: 21 Jul 2025
- ICLR 2025 Workshop LMRL
- Readers: Everyone