Patch2Loc: Learning to Localize Patches for Unsupervised Brain Lesion Detection

Hassan Baker, Austin J. Brockmeier

Keywords: Anomaly detection, Computer aided diagnosis, Machine learning, Magnetic resonance imaging

Abstract: Detecting brain lesions as abnormalities observed in magnetic resonance imaging (MRI) is essential for diagnosis and treatment. In the search of abnormalities, such as tumors and malformations, radiologists may benefit from computer-aided diagnostics that use computer vision systems trained with machine learning to segment normal tissue from abnormal brain tissue. While supervised learning methods require annotated lesions, we propose a new unsupervised approach (Patch2Loc) that learns from normal patches taken from structural MRI. We train a neural network model to map a patch back to its spatial location within a slice of the brain volume. During inference, abnormal patches are detected by the anomaly score based on the error and variance of the location prediction. By applying the network in a convolutional manner, this generates a pixel-wise heatmap of anomalies providing finer-grained segmentation. We demonstrate the ability of our model to segment abnormal brain tissues by applying our approach to the detection of tumor tissues in MRI on T2-weighted images from BraTS2021 and MSLUB datasets and T1-weighted images from ATLAS and WMH datasets. We show that it outperforms the state-of-the art in unsupervised segmentation.

Primary Area: applications to neuroscience & cognitive science

Submission Number: 22286