Human variation database: an open-source database template for genomic discovery

Anthony P. Fejes, Alireza Hadj Khodabakhshi, Inanç Birol, Steven J. M. Jones

Abstract: : Current public variation databases are based upon collaboratively pooling data into a single database with a single interface available to the public. This gives little control to the collaborator to mine the database and requires that they freely share their data with the owners of the repository. We aim to provide an alternative mechanism: providing the source code and application programming interface (API) of a database, enabling researchers to set up local versions without investing heavily in the development of the resource and allowing for confidential information to remain secure.