Improving Segmentation of Objects with Varying Sizes in Biomedical Images using Instance-wise and Center-of-Instance Segmentation Loss Function

Febrian Rachmadi, Charissa Poon, henrik skibbe

Keywords: Instance-wise and Center-of-Instance segmentation loss, segmentation loss

Abstract: In this paper, we propose a novel two-component loss for biomedical image segmentation tasks called the Instance-wise and Center-of-Instance (ICI) loss, a loss function that addresses the instance imbalance problem commonly encountered when using pixel-wise loss functions such as the Dice loss. The Instance-wise component improves the detection of small instances or ``blobs" in image datasets with both large and small instances. The Center-of-Instance component improves the overall detection accuracy. We compared the ICI loss with two existing losses, the Dice loss and the blob loss, in the task of stroke lesion segmentation using the ATLAS R2.0 challenge dataset from MICCAI 2022. Compared to the other losses, the ICI loss provided a better balanced segmentation, and significantly outperformed the Dice loss with an improvement of $1.7-3.7\%$ and the blob loss by $0.6-5.0\%$ in terms of the Dice similarity coefficient on both validation and test set, suggesting that the ICI loss is a potential solution to the instance imbalance problem.

TL;DR: This paper presents a novel Instance-wise and Center-of-Instance (ICI) loss which improved the segmentation of multiple instances with various sizes in biomedical images and significantly outperformed the Dice loss and blob loss.

Community Implementations: [ 1 code implementation](https://www.catalyzex.com/paper/arxiv:2304.06229/code)