Cardiac LGE MRI Segmentation With Cross-Modality Image Augmentation and Improved U-Net

Xinhua Yu, Junxin Chen, Bo Fang, Wei Wang, Li-bo Zhang, Zhihan Lv

Abstract: Image segmentation is a challenging problem in imaging informatics, which stems from the intersection of imaging techniques, computer science and biomedicine. In particular, accurate segmentation of cardiac structures in late gadolinium enhancement (LGE) cardiac magnetic resonance (CMR) is of great clinical importance for cardiac function assessment and myocardial disease diagnosis. However, it is a well-known challenge due to its special imaging modality and the lack of labeled LGE samples. In this paper, we propose an unsupervised ventricular segmentation algorithm that can perform biventricular segmentation of LGE images in the absence of labeled LGE data. There are two primary modules, the data augmentation procedure and the segmentation network. The easily available annotated balanced-Steady State Free Precession (bSSFP) images are employed for cross-modal data augmentation by image translation, where a single bSSFP image is converted into multiple synthetic LGE images while preserving the original morphological structure. Then, the proposed segmentation network is trained with the synthetic LGE images and used for segmenting real LGE images. Validation experiments demonstrated the effectiveness and advantages of the proposed algorithm.