OptTTA: Learnable Test-Time Augmentation for Source-Free Medical Image Segmentation Under Domain ShiftDownload PDF

03 Dec 2021, 13:55 (edited 22 Jun 2022)MIDL 2022Readers: Everyone
  • Keywords: Learnable test-time augmentation, domain shift, medical image segmentation
  • TL;DR: A novel learnable test-time augmentation tailored specifically to alleviate large domain shifts for the source-free medical image segmentation task
  • Abstract: As distribution shifts are inescapable in realistic clinical scenarios due to inconsistencies in imaging protocols, scanner vendors, and across different centers, well-trained deep models incur a domain generalization problem in unseen environments. Despite a myriad of model generalization techniques to circumvent this issue, their broad applicability is impeded as (i) source training data may not be accessible after deployment due to privacy regulations, (ii) the availability of adequate test domain samples is often impractical, and (iii) such model generalization methods are not well-calibrated, often making unreliable overconfident predictions. This paper proposes a novel learnable test-time augmentation, namely OptTTA, tailored specifically to alleviate large domain shifts for the source-free medical image segmentation task. OptTTA enables efficiently generating augmented views of test input, resembling the style of private source images and bridging a domain gap between training and test data. Our proposed method explores optimal learnable test-time augmentation sub-policies that provide lower predictive entropy and match the feature statistics stored in the BatchNorm layers of the pretrained source model without requiring access to training source samples. Thorough evaluation and ablation studies on challenging multi-center and multi-vendor MRI datasets of three anatomies have demonstrated the performance superiority of OptTTA over prior-arts test-time augmentation and model adaptation methods. Additionally, the generalization capabilities and effectiveness of OptTTA are evaluated in terms of aleatoric uncertainty and model calibration analyses. Our PyTorch code implementation is publicly available at https://github.com/devavratTomar/OptTTA.
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  • Paper Type: both
  • Primary Subject Area: Application: Other
  • Secondary Subject Area: Transfer Learning and Domain Adaptation
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  • Code And Data: https://github.com/devavratTomar/OptTTA
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