Knowledge-intensive conceptual retrieval and passage extraction of biomedical literature

Wei Zhou, Clement T. Yu, Neil R. Smalheiser, Vetle I. Torvik, Jie Hong

Abstract: This paper presents a study of incorporating domain-specific knowledge (i.e., information about concepts and relationships between concepts in a certain domain) in an information retrieval (IR) system to improve its effectiveness in retrieving biomedical literature. The effects of different types of domain-specific knowledge in performance contribution are examined. Based on the TREC platform, we show that appropriate use of domain-specific knowledge in a proposed conceptual retrieval model yields about 23% improvement over the best reported result in passage retrieval in the Genomics Track of TREC 2006.