Multi-stream Cell Segmentation with Low-level Cues for Multi-modality ImagesDownload PDF

14 Nov 2022 (modified: 10 Mar 2023)Submitted to NeurIPS CellSeg 2022Readers: Everyone
Keywords: Cell segmentation, Deep neural networks, Low-level cues, Multi-modality image segmentation
Abstract: Cell segmentation for multi-modal microscopy images remains a challenge due to the complex textures, patterns, and cell shapes in these images. To tackle the problem, we first develop an automatic cell classification pipeline to label the microscopy images based on their low-level image characteristics, and then train a classification model based on the category labels. Afterward, we train a separate segmentation model for each category using the images in the corresponding category. Besides, we further deploy two types of segmentation models to segment cells with roundish and irregular shapes respectively. Moreover, an efficient and powerful backbone model is utilized to enhance the efficiency of our segmentation model. Evaluated on the Tuning Set of NeurIPS 2022 Cell Segmentation Challenge, our method achieves an F1-score of 0.8795 and the running time for all cases is within the time tolerance.
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