MEGA: Message Passing Neural Networks for Multigraphs with EdGe Attributes

10 Apr 2026 (modified: 21 Apr 2026)Under review for TMLREveryoneRevisionsBibTeXCC BY 4.0
Abstract: Edge-attributed multigraphs, in which multiple edges with distinct attributes connect the same pair of nodes, arise naturally in many real-world systems. In these graphs, effective learning requires preserving information from repeated interactions while distinguishing contributions from different neighbors. Existing neural network solutions for edge-attributed multigraphs remain limited: some lose information from repeated interactions, while others break permutation equivariance. To address this, we introduce \emph{neighbor-aware aggregation}, an operator that first combines multi-edge features for each neighbor and then aggregates across neighbors. This operator captures per-neighbor statistics that standard single-stage aggregation cannot represent. Building on this operator, we present MEGA-GNN, a model-agnostic message-passing framework for edge-attributed multigraphs. We show that MEGA-GNN is permutation equivariant and has the same asymptotic complexity as standard GNNs with edge updates. We evaluate our approach on datasets from social networks and financial transaction networks. Neighbor-aware aggregation consistently improves GNN performance and matches or surpasses state-of-the-art methods.
Submission Type: Regular submission (no more than 12 pages of main content)
Assigned Action Editor: ~Vicenç_Gómez1
Submission Number: 8348
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