Neurosymbolic AI Reveals Biases and Limitations in ML-Driven Drug Discovery
Keywords: neurosymbolic AI, mechanism of action, drug discovery, reinforcement learning, interpretability, drug repurposing
TL;DR: We designed a knowledge graph, MoA-net, and a new neurosymbolic approach, MARS, to deconvolute the mechanisms-of-action of drug candidates. By using MARS, we revealed several concerns worth considering for ML-based drug discovery.
Abstract: Recently, several machine learning approaches have aided drug discovery by identifying promising candidates and predicting potential indications. However, understanding the ways in which drugs achieve their therapeutic effects, otherwise known as their mechanisms-of-action (MoA), is important for understanding potency, side effects, and interactions with various tissue types, among other things. We leveraged and improved the interpretability of a neurosymbolic reinforcement learning method in an attempt to reveal MoAs. While doing so, we observed that our findings raised several concerns with the reasoning process. Specifically, we debate situations in which patterns following a "guilt-by-association" trend are useful for predictions regarding novel compounds. We present our results to facilitate discussion about how generalizable ML-based models are to the drug discovery process as well as how important interpretability can be to such models.
Submission Number: 49
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