Risks of AI scientists: prioritizing safeguarding over autonomy

Xiangru Tang, Qiao Jin, Kunlun Zhu, Tongxin Yuan, Yichi Zhang, Wangchunshu Zhou, Meng Qu, Yilun Zhao, Jian Tang, Zhuosheng Zhang, Arman Cohan, Dov Greenbaum, Zhiyong Lu, Mark Gerstein

Published: 18 Sept 2025, Last Modified: 17 Mar 2026Nature CommunicationsEveryoneRevisionsCC BY-SA 4.0
Abstract: AI scientists powered by large language models have demonstrated substantial promise in autonomously conducting experiments and facilitating scientific discoveries across various disciplines. While their capabilities are promising, these agents also introduce novel vulnerabilities that require careful consideration for safety. However, there has been limited comprehensive exploration of these vulnerabilities. This perspective examines vulnerabilities in AI scientists, shedding light on potential risks associated with their misuse, and emphasizing the need for safety measures. We begin by providing an overview of the potential risks inherent to AI scientists, taking into account user intent, the specific scientific domain, and their potential impact on the external environment. Then, we explore the underlying causes of these vulnerabilities and provide a scoping review of the limited existing works. Based on our analysis, we propose a triadic framework involving human regulation, agent alignment, and an understanding of environmental feedback (agent regulation) to mitigate these identified risks. Furthermore, we highlight the limitations and challenges associated with safeguarding AI scientists and advocate for the development of improved models, robust benchmarks, and comprehensive regulations. AI scientists powered by large language models and AI agents present both opportunities and risks in automatic scientific discovery. Here, the authors examine the vulnerabilities of AI scientists, propose a risk taxonomy based on user intent and impact domains, and develop a triadic safeguarding framework emphasizing human regulation, agent alignment, and environmental feedback understanding.
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