VARS-fUSI: Variable Sampling for Fast and Efficient Functional Ultrasound Imaging using Neural Operators

Bahareh Tolooshams, Lydia Lin, Thierri Callier, Jiayun Wang, Sanvi Pal, Aditi Chandrashekar, Claire Rabut, Zongyi Li, Chase Blagden, Sumner L. Norman, Kamyar Azizzadenesheli, Charles Liu, Mikhail G. Shapiro, Richard A. Andersen, Anima Anandkumar

Abstract: h3>Abstract</h3> <p>Functional ultrasound imaging (fUSI) is a promising neuroimaging method that infers neural activity by detecting cerebral blood volume changes. It offers high sensitivity and spatial resolution relative to fMRI and is an epidural alternative to electrophysiology for medical and neuroscience applications, including brain-computer interfaces. However, current fUSI methods require hundreds of compounded images and ultrasound pulse emissions, leading to high computational costs, memory demands, and potential probe heating. We propose VARiable Sampling fUSI (VARS-fUSI), the first deep learning fUSI method to allow for different sampling durations and rates during training and inference by using neural operators. VARS-fUSI reconstructs high-quality fUSI images using 10 − 15% of the time or sampling rate needed per image while preserving decodable behavior-correlated signals. Additionally, VARS-fUSI offers efficient finetuning for generalization to new animals and humans. Demonstrated across mouse, monkey, and human data, VARS-fUSI achieves state-of-the-art performance, enhancing imaging efficiency by significantly reducing storage and processing needs.</p>

External IDs:doi:10.1101/2025.04.16.649237