Neural Likelihood Approximation for Integer Valued Time Series Data
Abstract: Stochastic processes defined on integer valued state spaces are popular within the physical and biological sciences. These models are necessary for capturing the dynamics of small systems where the individual nature of the populations cannot be ignored and stochastic effects are important. The inference of the parameters of such models, from time series data, is challenging due to intractability of the likelihood. To work at all, current simulation based inference methods require the generation of realisations of the model conditional on the data, which can be both tricky to implement and computationally expensive. In this paper we instead construct a neural likelihood approximation that can be trained using unconditional simulation of the underlying model, which is much simpler. We demonstrate our method by performing inference on a number of ecological and epidemiological models, showing that we can accurately approximate the true posterior while achieving significant computational speed ups compared to current best methods.
Submission Length: Long submission (more than 12 pages of main content)
Changes Since Last Submission: Changed to camera ready template
Code: https://github.com/lukeoloughlin/sbi-for-integer-time-series
Assigned Action Editor: ~Adam_Arany1
Submission Number: 2587
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