Learning Disentangled Behavior Embeddings

Changhao Shi, Sivan Schwartz, Shahar Levy, Shay Achvat, Maisan Abboud, Amir Ghanayim, Jackie Schiller, Gal Mishne

Keywords: Neuroscience, Animal Behavior, Behavioral Videos, Generative Models

Abstract: To understand the relationship between behavior and neural activity, experiments in neuroscience often include an animal performing a repeated behavior such as a motor task. Recent progress in computer vision and deep learning has shown great potential in the automated analysis of behavior by leveraging large and high-quality video datasets. In this paper, we design Disentangled Behavior Embedding (DBE) to learn robust behavioral embeddings from unlabeled, multi-view, high-resolution behavioral videos across different animals and multiple sessions. We further combine DBE with a stochastic temporal model to propose Variational Disentangled Behavior Embedding (VDBE), an end-to-end approach that learns meaningful discrete behavior representations and generates interpretable behavioral videos. Our models learn consistent behavior representations by explicitly disentangling the dynamic behavioral factors (pose) from time-invariant, non-behavioral nuisance factors (context) in a deep autoencoder, and exploit the temporal structures of pose dynamics. Compared to competing approaches, DBE and VDBE enjoy superior performance on downstream tasks such as fine-grained behavioral motif generation and behavior decoding.

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Code: https://github.com/Mishne-Lab/DBE-Disentangled-Behavior-Embedding