Processed proteomic and phosphoproteomic timeseries from Ostreococcus tauri, with Gene Ontology enrichment, from "A phospho-dawn of protein modification anticipates light onset in the picoeukaryote O. tauri"

Matthew M. Hindle, Sarah F. Martin, Zeenat Noordally, Andrew J. Millar, T. Ian Simpson, Thierry Le Bihan

Abstract: Diel regulation of protein levels and protein modification had been less studied than transcript rhythms. These data tables in .XLSX format report partial proteome (Table_S1) and phosphoproteome data (Table_S2), assayed using shotgun mass-spectrometry, from cultures of the alga Ostreococcus tauri under light-dark cycles, sampled at Zeitgeber times (ZT, hours) 0, 4, 8, 12, 16 and 20. 10% of quantified proteins but two-thirds of phosphoproteins were rhythmic. Gene Ontology enrichment analysis was applied to infer the functional enrichment of the proteins or phosphoproteins, grouped by their loadings in PCA analysis (Table_S3), by hierarchical clustering (Table_S4) or by the peak time of their rhythmic profile (Table_S5).Prompted by night-peaking and apparently dark-stable proteins, we also tested the proteome of cultures transferred to prolonged darkness for 24, 48, 72 or 96h (Table_S6), where the proteome changed less than under the diel cycle. The raw data are available from ProteomeXchange, with identifiers PXD001734, PXD001735 and PXD002909.

External IDs:doi:10.5281/zenodo.7742117