DeepRF: A deep learning method for predicting metabolic pathways in organisms based on annotated genomes

Hayat Ali Shah, Juan Liu, Zhihui Yang, Xiaolei Zhang, Jing Feng

Abstract: Highlights•Machine learning methods for predicting metabolic pathways in organisms.•Pathway prediction can help construct the metabolic network of an organism.•Manual metabolic pathway construction cannot be used for large genome sequencing data.•Machine learning methods can be used to predict previously unpredicted pathways.•Scalability, interpretability, and reliability are strengths of machine learning approaches.