Giga-scale Kernel Matrix-Vector Multiplication on GPU

Robert Hu, Siu Lun Chau, Dino Sejdinovic, Joan Alexis Glaunès

Keywords: Kernel, GPU, RKHS, kernel matrix vector multiplication, interpolation, large scale, giga scale, 10^9 points, big data

TL;DR: Kernel Matrix Vector Multiplication on a billion points using one GPU

Abstract: Kernel matrix-vector multiplication (KMVM) is a foundational operation in machine learning and scientific computing. However, as KMVM tends to scale quadratically in both memory and time, applications are often limited by these computational constraints. In this paper, we propose a novel approximation procedure coined \textit{Faster-Fast and Free Memory Method} ($\text{F}^3$M) to address these scaling issues of KMVM for tall~($10^8\sim 10^9$) and skinny~($D\leq7$) data. Extensive experiments demonstrate that $\text{F}^3$M has empirical \emph{linear time and memory} complexity with a relative error of order $10^{-3}$ and can compute a full KMVM for a billion points \emph{in under a minute} on a high-end GPU, leading to a significant speed-up in comparison to existing CPU methods. We demonstrate the utility of our procedure by applying it as a drop-in for the state-of-the-art GPU-based linear solver FALKON, \emph{improving speed 1.5-5.5 times} at the cost of $<1\%$ drop in accuracy. We further demonstrate competitive results on \emph{Gaussian Process regression} coupled with significant speedups on a variety of real-world datasets.