SAM.MD: Zero-shot medical image segmentation capabilities of the Segment Anything Model

Tassilo Wald, Saikat Roy, Gregor Koehler, Nico Disch, Maximilian Rouven Rokuss, Julius Holzschuh, David Zimmerer, Klaus Maier-Hein

Keywords: medical image segmentation, SAM, foundation models, zero-shot learning

TL;DR: We evaluate FAIRs Segment Anything Model (SAM) for abdominal organ medical image segmentation through prompting

Abstract:

Foundation models have taken over natural language processing and image generation domains due to the flexibility of prompting. With the recent introduction of the Segment Anything Model (SAM), this prompt-driven paradigm has entered image segmentation with a hitherto unexplored abundance of capabilities. The purpose of this paper is to conduct an initial evaluation of the out-of-the-box zero-shot capabilities of SAM for medical image segmentation, by evaluating its performance on an abdominal CT organ segmentation task, via point or bounding box based prompting.
We show that SAM generalizes well to CT data, making it a potential catalyst for the advancement of semi-automatic segmentation tools for clinicians.
We believe that this foundation model, while not reaching state-of-the-art segmentation performance in our investigations, can serve as a highly potent starting point for further adaptations of such models to the intricacies of the medical domain.