Multi-task learning with summary statistics

Parker Knight, Rui Duan

Keywords: multi-task learning, genetic risk prediction, summary statistics

TL;DR: We develop a multi-task learning framework for integrating summary statistics from distinct sources to form genetic risk predictions.

Abstract: Multi-task learning has emerged as a powerful machine learning paradigm for integrating data from multiple sources, leveraging similarities between tasks to improve overall model performance. However, the application of multi-task learning to real-world settings is hindered by data-sharing constraints, especially in healthcare settings. To address this challenge, we propose a flexible multi-task learning framework utilizing summary statistics from various sources. Additionally, we present an adaptive parameter selection approach based on a variant of Lepski's method, allowing for data-driven tuning parameter selection when only summary statistics are accessible. Our systematic non-asymptotic analysis characterizes the performance of the proposed methods under various regimes of the source datasets' sample complexity and overlap. We demonstrate our theoretical findings and the performance of the method through extensive simulations. This work offers a more flexible tool for training related models across various domains, with practical implications in genetic risk prediction and many other fields.

Submission Number: 9310