OpenSegSPIM: a user-friendly segmentation tool for SPIM data

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Laurent Gole, Kok Haur Ong, Thomas Boudier, Weimiao Yu, Sohail Ahmed

Published: 01 Jan 2016, Last Modified: 15 May 2025Bioinform. 2016EveryoneRevisionsBibTeXCC BY-SA 4.0
Abstract: Summary: OpenSegSPIM is an open access and user friendly 3D automatic quantitative analysis tool for Single Plane Illumination Microscopy data. The software is designed to extract, in a user-friendly way, quantitative relevant information from SPIM image stacks, such as the number of nuclei or cells. It provides quantitative measurement (volume, sphericity, distance, intensity) on Light Sheet Fluorescent Microscopy images.