Abstract: Highlights•Propose a novel multiple instance learning (MIL) framework for label-efficient cytological whole slide image (WSI) screening with slide-level label only.•Investigate intrinsic properties of cytology WSIs and be the first to adapt variational positive-unlabeled learning in WSI analysis for patch feature extraction.•Provide a multi-scale cross-attention-based Transformer aggregation scheme to capture complementary information of small and large patches.•Perform evaluation and interpretation of our pipeline on multiple cytology datasets with extensive comparison with state-of-the-art baselines.
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