Disambiguating biomedical acronyms using EMIM

Nut Limsopatham, Rodrygo L. T. Santos, Craig Macdonald, Iadh Ounis

Abstract: Expanding a query with acronyms or their corresponding 'long-forms' has not been shown to provide consistent improvements in the biomedical IR literature. The major open issue with expanding acronyms in a query is their inherent ambiguity, as an acronym can refer to multiple long-forms. At the same time, a long-form identified in a query can be expanded with its acronym(s); however, some of these may be also ambiguous and lead to poor retrieval performance. In this work, we propose the use of the EMIM (Expected Mutual Information Measure) between a long-form and its abbreviated acronym to measure ambiguity. We experiment with expanding both acronyms and long-forms identified in the queries from the adhoc task of the TREC 2004 Genomics track. Our preliminary analysis shows the potential of both acronym and long-form expansions for biomedical IR.