ICLR 2025 Workshop MLGenX Submissions

Sampling Protein Language Models for Functional Protein Design
Jeremie Theddy Darmawan, Yarin Gal, Pascal Notin
- Published: 05 Mar 2025, Last Modified: 29 Mar 2025
- MLGenX 2025
- Readers: Everyone
Flexible Models of Functional Annotations to Variant Effects using Accelerated Linear Algebra
Alan Nawzad Amin, Andres Potapczynski, Andrew Gordon Wilson
- Published: 05 Mar 2025, Last Modified: 05 Mar 2025
- MLGenX 2025
- Readers: Everyone
InfoSEM: A Deep Generative Model with Informative Priors for Gene Regulatory Network Inference
Tianyu Cui, Song-Jun Xu, Artem Moskalev, Shuwei Li, Tommaso Mansi, Mangal Prakash, Rui Liao
- Published: 05 Mar 2025, Last Modified: 10 Apr 2025
- MLGenX 2025 Spotlight
- Readers: Everyone
ESM-Effect: An Effective and Efficient Fine-Tuning Framework towards accurate prediction of Mutation's Functional Effect
Moritz Glaser, Johannes Brägelmann
- Published: 05 Mar 2025, Last Modified: 14 Apr 2025
- MLGenX 2025 Spotlight
- Readers: Everyone
EFFICIENT FINE-TUNING OF SINGLE-CELL FOUNDATION MODELS ENABLES ZERO-SHOT MOLECULAR PERTURBATION PREDICTION
Sepideh Maleki, Jan-Christian Huetter, David Richmond, Kangway V. Chuang, Gabriele Scalia, Tommaso Biancalani
- Published: 05 Mar 2025, Last Modified: 24 Apr 2025
- MLGenX 2025 Spotlight
- Readers: Everyone
ProteinGPT: Multimodal LLM for Protein Property Prediction and Structure Understanding
Yijia Xiao, Edward Sun, Yiqiao Jin, Qifan Wang, Wei Wang
- Published: 05 Mar 2025, Last Modified: 05 Apr 2025
- MLGenX 2025 Spotlight
- Readers: Everyone
Uncertainty-aware genomic deep learning with knowledge distillation
Jessica Zhou, Kaeli Rizzo, Ziqi Tang, Peter K Koo
- Published: 05 Mar 2025, Last Modified: 05 Mar 2025
- MLGenX 2025
- Readers: Everyone
SPACE: Your Genomic Profile Predictor is a Powerful DNA Foundation Model
Jiwei Zhu, Zhao Yang, Bing Su
- Published: 05 Mar 2025, Last Modified: 05 Mar 2025
- MLGenX 2025
- Readers: Everyone
Knockoff Statistics-Driven Interpretable Deep Learning Models for Uncovering Potential Biomarkers for COVID-19 Severity Prediction
Qian Liu, Daryl Fung, Huanjing Liu, Pingzhao Hu
- Published: 05 Mar 2025, Last Modified: 30 Mar 2025
- MLGenX 2025 TinyPapers
- Readers: Everyone
Enhancing Downstream Analysis in Genome Sequencing: Species Classification While Basecalling
Riselda Kodra, Hadjer Benmeziane, Irem Boybat, William Andrew Simon
- Published: 05 Mar 2025, Last Modified: 24 Apr 2025
- MLGenX 2025 TinyPapers
- Readers: Everyone
Exploring the potential of genetic variation and zygosity in DNA language models
Ali Saadat, Jacques Fellay
- Published: 05 Mar 2025, Last Modified: 07 May 2025
- MLGenX 2025 TinyPapers
- Readers: Everyone