For high-dimensional hierarchical models, consider exchangeability of effects across covariates instead of across datasets

Brian L. Trippe, Hilary Finucane, Tamara Broderick

Keywords: Hierarchical Bayesian modeling, linear models, exchangeability, frequentist properties

TL;DR: For high-dimensional hierarchical linear models, modeling effects exchangeably across covariates instead of across groups yields better estimates.

Abstract: Hierarchical Bayesian methods enable information sharing across regression problems on multiple groups of data. While standard practice is to model regression parameters (effects) as (1) exchangeable across the groups and (2) correlated to differing degrees across covariates, we show that this approach exhibits poor statistical performance when the number of covariates exceeds the number of groups. For instance, in statistical genetics, we might regress dozens of traits (defining groups) for thousands of individuals (responses) on up to millions of genetic variants (covariates). When an analyst has more covariates than groups, we argue that it is often preferable to instead model effects as (1) exchangeable across covariates and (2) correlated to differing degrees across groups. To this end, we propose a hierarchical model expressing our alternative perspective. We devise an empirical Bayes estimator for learning the degree of correlation between groups. We develop theory that demonstrates that our method outperforms the classic approach when the number of covariates dominates the number of groups, and corroborate this result empirically on several high-dimensional multiple regression and classification problems.

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