3D multirater RCNN for multimodal multi class segmentation of extremely small objects (ESO)

Dec 13, 2018 MIDL 2019 Conference Full Submission readers: everyone Show Bibtex
  • Abstract: Extremely small objects (ESO) have become observable on clinical routine magnetic resonance imaging acquisitions, thanks to a reduction in acquisition time at higher resolution. Despite their small size (usually $<$10 voxels per object for an image of more than $10^6$ voxels), these markers reflect tissue damage and need to be accounted for to investigate the complete phenotype of complex pathological pathways. In addition to their very small size, variability in shape and appearance leads to high labelling variability across human raters, resulting in a very noisy gold standard. Such objects are notably present in the context of cerebral small vessel disease where enlarged perivascular spaces and lacunes, commonly observed in the ageing population, are thought to be associated with acceleration of cognitive decline and risk of dementia onset. In this work, we redesign the RCNN model to scale to 3D data, and to jointly detect and characterise these important markers of age-related neurovascular changes. We also propose training strategies enforcing the detection of extremely small objects, ensuring a tractable and stable training process.
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