Hyperspectral Unmixing for Raman Spectroscopy via Physics-Constrained Autoencoders

Dimitar Georgiev, Álvaro Fernández-Galiana, Simon Vilms Pedersen, Georgios Papadopoulos, Ruoxiao Xie, Molly M. Stevens, Mauricio Barahona

Keywords: Raman spectroscopy, hyperspectral unmixing, chemometrics, autoencoders, machine learning

TL;DR: We develop autoencoder models for hyperspectral unmixing of Raman spectroscopy data, which provide improved accuracy, robustness and efficiency compared to standard methods for unmixing.

Abstract: Raman spectroscopy is widely used across science and industry to characterize the chemical composition of samples in a nondestructive, label-free manner. Many applications entail the unmixing of signals from mixtures of molecular species to identify the individual components present and their proportions, yet conventional methods for chemometrics often struggle with complex mixture scenarios encountered in practice. Here, we develop hyperspectral unmixing algorithms for Raman spectroscopy based on autoencoder neural networks, which we systematically validate using synthetic and experimental benchmark datasets created in-house. Our results demonstrate that unmixing autoencoders provide improved accuracy, robustness and efficiency compared to standard unmixing methods. We also showcase the applicability of autoencoders to complex biological settings by showing improved biochemical characterization of volumetric Raman imaging data from a human leukemia monocytic cell.

Submission Number: 7