Biqing Zhu

Researcher, Institute of Computation, Altos Labs, Inc.

Joined

June 2024

Names

Biqing Zhu (Preferred)

Emails

****@yale.edu (Confirmed)

****@gmail.com (Confirmed)

****@altoslabs.com (Confirmed)

Personal Links

Google Scholar

ORCID

Career & Education History

Researcher

Institute of Computation, Altos Labs, Inc. (altoslabs.com)

2025 – Present

PhD student

Computational Biology and Bioinformatics, Yale University (yale.edu)

2019 – 2024

Advisors, Relations & Conflicts

PhD Advisor

Hongyu Zhao

2019 – 2024

Expertise

Bioinformatics

Present

Single Cell Multi-Omics

Present

Machine Learning

Present

Data Science

2025 – Present

Computational Biology

2019 – 2024

Publications

The subfornical organ is a nucleus for gut-derived T cells that regulate behaviour
Tomomi M. Yoshida, Mytien Nguyen, Le Zhang, Benjamin Y. Lu, Biqing Zhu, Katie N. Murray, Yann S. Mineur, Cuiling Zhang, Di Xu, Elizabeth Lin, Joseph Luchsinger, Sagar Bhatta, Daniel A. Waizman, Mackenzie E. Coden, Yifan Ma, Kavita Israni-Winger, Anthony Russo, Haowei Wang, Wenzhi Song, Jafar Al Souz et al. (8 additional authors not shown)
- Nature
- Readers: Everyone
Single-cell transcriptomic and proteomic analysis of Parkinson’s disease brains
Biqing Zhu, Jae-Min Park, Sarah R. Coffey, Anthony Russo, I-Uen Hsu, Jiawei Wang, Chang Su, Rui Chang, TuKiet T. Lam, Pallavi P. Gopal, Stephen D. Ginsberg, Hongyu Zhao, David A. Hafler, Sreeganga S. Chandra, Le Zhang
- Science Translational Medicine
- Readers: Everyone
Deep Learning for Accurate Diagnosis of Viral Infections through scRNA-seq Analysis: A Comprehensive Benchmark Study
Ziwei Yang, Xuxi Chen, Biqing Zhu, Tianlong Chen, Zhangyang Wang
- Accepted by DMLR
- Readers: Everyone
Decoding transcriptomic signatures of cysteine string protein alpha–mediated synapse maintenance
Na Wang, Biqing Zhu, Mary Alice Allnutt, Rosalie M. Grijalva, Hongyu Zhao, Sreeganga S. Chandra
- Proceedings of the National Academy of Sciences
- Readers: Everyone
A statistical framework to identify cell types whose genetically regulated proportions are associated with complex diseases
Wei Liu, Mingyao Li, Wenxuan Deng, Ming Chen, Zihan Dong, Biqing Zhu, Zhaolong Yu, Daiwei Tang, Maor Sauler, Chen Lin, Louise V. Wain, Michael H. Cho, Naftali Kaminski, Hongyu Zhao
- PLOS Genetics
- Readers: Everyone
An open protocol for modeling T Cell Clonotype repertoires using TCRβ CDR3 sequences
Burcu Gurun, Wesley Horton, Dhaarini Murugan, Biqing Zhu, Patrick Leyshock, Sushil Kumar, Katelyn T. Byrne, Robert H. Vonderheide, Adam A. Margolin, Motomi Mori, Paul T. Spellman, Lisa M. Coussens, Terence P. Speed
- Crossref
- Readers: Everyone
Clustering High-Dimensional Data via Feature Selection
Tianqi Liu, Yu Lu, Biqing Zhu, Hongyu Zhao
- Biometrics
- Readers: Everyone
A Statistical Framework to Identify Cell Types Whose Genetically Regulated Proportions are Associated with Complex Diseases
Hongyu Zhao, Wei Liu, Wenxuan Deng, Ming Chen, Zihan Dong, Biqing Zhu, Zhaolong Yu, Daiwei Tang, Maor Sauler, Louise Wain, Michael Cho, Naftali Kaminski
- Crossref
- Readers: Everyone

Co-Authors

View all 72 co-authors