Giulio Caravagna

Associate Professor, Mathematics, Informatics and Geosciences, University of Trieste

Joined

January 2025

Names

Giulio Caravagna (Preferred)

Emails

****@units.it (Confirmed)

Personal Links

Homepage

Google Scholar

ORCID

Career & Education History

Associate Professor

Mathematics, Informatics and Geosciences, University of Trieste (units.it)

2020 – Present

Advisors, Relations & Conflicts

No relations added

Expertise

machine learning for biology

2020 – Present

Publications

Scalable, fast and accurate differential gene expression testing from millions of cells of multiple patients
Giovanni Santacatterina, Niccolo Tosato, Salvatore Milite, Katsiaryna Davydzenka, Edoardo Insaghi, Stefano Cozzini, Guido Sanguinetti, Leonardo Egidi, Giulio Caravagna
- Crossref
- Readers: Everyone
A reference-free strategy for circulating tumor DNA detection from whole-genome sequencing data
Carmen Oroperv, Amanda Frydendahl, Tenna Vesterman Henriksen, Giovanni Santacatterina, Alice Antonello, Nicola Calonaci, Mads Heilskov Rasmussen, Giulio Caravagna, Claus Lindbjerg Andersen, Søren Besenbacher
- Crossref
- Readers: Everyone
Comprehensive analysis of mutational processes across 20 000 adult and pediatric tumors
Matteo Villa, Federica Malighetti, Luca De Sano, Alberto Maria Villa, Nicoletta Cordani, Andrea Aroldi, Marco Antoniotti, Giulio Caravagna, Alex Graudenzi, Rocco Piazza, Luca Mologni, Daniele Ramazzotti
- Nucleic Acids Research
- Readers: Everyone
Mixtures of Neural Cellular Automata: A Stochastic Framework for Biological Growth Modelling
Salvatore Milite, Giulio Caravagna, Andrea Sottoriva
- GenBio 2025 Poster
- Readers: Everyone
Extending differential gene expression testing to handle genome aneuploidy in cancer
Katsiaryna Davydzenka, Giulio Caravagna, Guido Sanguinetti
- Crossref
- Readers: Everyone
Timing and clustering co-occurring genome amplifications in cancers
Sara Cocomello, Giovanni Santacatterina, Riccardo Bergamin, Alice Antonello, Giulio Caravagna
- Crossref
- Readers: Everyone
Model-based tumour subclonal deconvolution accounting for spatio-temporal sampling biases
Elena Rivaroli, Elena Buscaroli, Salvatore Milite, Alberto Casagrande, Giulio Caravagna
- Crossref
- Readers: Everyone
Predicting tumour evolution and drug resistance from heterogenous longitudinal cancer data
Giovanni Santacatterina, Riccardo Bergamin, Antonella Zucchetto, Roberta Laureana, Maria Ilaria del Principe, Valter Gattei, Leonardo Egidi, Giulio Caravagna
- Crossref
- Readers: Everyone
Deep Learning-Informed Bayesian Model-Based Analysis to Estimate Superspreading Events in Epidemic Outbreaks
Arianna Tasciotti, Federico Urban, Federica de Dea, Luca Bortolussi, Giulio Caravagna, Alberto D'Onofrio
- IEEE Access
- Readers: Everyone
BASCULE: Bayesian inference and clustering of mutational signatures leveraging biological priors
Elena Buscaroli, Azad Sadr, Riccardo Bergamin, Salvatore Milite, Edith Natalia Villegas Garcia, Arianna Tasciotti, Alessio Ansuini, Daniele Ramazzotti, Nicola Calonaci, Giulio Caravagna
- Crossref
- Readers: Everyone

View all 33 publications

Co-Authors

View all 171 co-authors