Henrik Skibbe

Full Professor, Matsuyama University

Researcher, RIKEN CBS

Joined

April 2021

Names

Henrik Skibbe (Preferred)

henrik skibbe

Emails

****@riken.jp (Confirmed)

****@g.matsuyama-u.ac.jp (Confirmed)

Personal Links

Homepage

Google Scholar

Career & Education History

Full Professor

Matsuyama University (g.matsuyama-u.ac.jp)

2025 – Present

Researcher

RIKEN CBS (riken.jp)

2019 – Present

Advisors, Relations & Conflicts

No relations added

Expertise

No areas of expertise listed

Publications

Dual-Color Tracer Segmentation with Mean-Teacher Learning and Bleed-Through Correction
Peerawat Pannattee, Akiya Watakabe, Tomomi Shimogori, Henrik Skibbe
- MIDL 2026 Short Papers Submission
- Readers: Everyone
Registration of Spatial Transcriptomics Images to an Atlas using Implicit Neural Representations
Meghane Decroocq, Kohei Onishi, Tomomi Shimogori, Henrik Skibbe
- MIDL 2026 Short Papers Submission
- Readers: Everyone
Meta-Learning for Segmention of In Situ Hybridization Gene Expression Images
Charissa Poon, Michal Byra, Tomomi Shimogori, Henrik Skibbe
- MIDL 2024 Short Papers
- Readers: Everyone
Multi-scale Stochastic Generation of Labelled Microscopy Images for Neuron Segmentation
Meghane Decroocq, Binbin XU, Katherine L Thompson-Peer, Adrian Moore, Henrik Skibbe
- MIDL 2024 Poster
- Readers: Everyone
Improving Segmentation of Objects with Varying Sizes in Biomedical Images using Instance-wise and Center-of-Instance Segmentation Loss Function
Febrian Rachmadi, Charissa Poon, henrik skibbe
- Published: 04 Apr 2023, Last Modified: 15 Feb 2026
- MIDL 2023 Oral
- Readers: Everyone
Transfer Learning for Automated Anterograde Tracer Signal Segmentation in Marmoset Brain Microscopy Images
Febrian Rachmadi, Akiya Watakabe, Tetsuo Yamamori, henrik skibbe
- 09 Apr 2021 (modified: 16 May 2023)
- Submitted to MIDL 2021
- Readers: Everyone
Semi-supervised Image-to-Image translation for robust image registration
henrik skibbe, akiya watakabe, Febrian Rachmadi, Carlos Enrique Gutierrez, Ken Nakae, tetsuo yamamori
- Published: 11 May 2021, Last Modified: 16 May 2023
- MIDL 2021 Poster
- Readers: Everyone

Henrik Skibbe

Names

Emails

Personal Links

Career & Education History

Advisors, Relations & Conflicts

Expertise

Publications

Dual-Color Tracer Segmentation with Mean-Teacher Learning and Bleed-Through Correction

Registration of Spatial Transcriptomics Images to an Atlas using Implicit Neural Representations

Meta-Learning for Segmention of In Situ Hybridization Gene Expression Images

Multi-scale Stochastic Generation of Labelled Microscopy Images for Neuron Segmentation

Improving Segmentation of Objects with Varying Sizes in Biomedical Images using Instance-wise and Center-of-Instance Segmentation Loss Function

Transfer Learning for Automated Anterograde Tracer Signal Segmentation in Marmoset Brain Microscopy Images

Semi-supervised Image-to-Image translation for robust image registration

Co-Authors