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Jakub M Bartoszewicz
Group Leader, Hasso Plattner Institute
Joined
February 2023
Names
Jakub M Bartoszewicz
(Preferred)
,
Jakub Bartoszewicz
,
Jakub M. Bartoszewicz
Emails
****@hpi.de
(Confirmed)
,
****@mit.edu
(Confirmed)
,
****@csail.mit.edu
(Confirmed)
Personal Links
DBLP
ORCID
Career & Education History
Group Leader
Hasso Plattner Institute
(hpi.de)
2024
–
Present
Postdoc
Computer Science and Artificial Intelligence Laboratory, Electrical Engineering & Computer Science
(csail.mit.edu)
2023
–
2024
Postdoc
Hasso Plattner Institute
(hpi.de)
2022
–
2024
PhD student
Hasso Plattner Institute
(hpi.de)
2020
–
2022
PhD student
Freie Universität Berlin
(fu-berlin.de)
2017
–
2022
PhD student
Robert Koch Institute
(rki.de)
2017
–
2019
MS student
Adam Mickiewicz University of Poznan
(amu.edu.pl)
2011
–
2016
MS student
Technical University of Poznan
(put.poznan.pl)
2013
–
2015
Undergrad student
Technical University of Poznan
(put.poznan.pl)
2010
–
2013
Advisors, Relations & Conflicts
No relations added
Expertise
No areas of expertise listed
Publications
Motif Interactions Affect Post-Hoc Interpretability of Genomic Convolutional Neural Networks
Marta Stefania Lemanczyk
,
Jakub M Bartoszewicz
,
Bernhard Y Renard
bioRxiv
Readers:
Everyone
Interpretable detection of novel human viruses from genome sequencing data
Jakub M Bartoszewicz
,
Anja Seidel
,
Bernhard Y Renard
NAR Genomics and Bioinformatics
Readers:
Everyone
Beware of Data Leakage from Protein LLM Pretraining
Leon Hermann
,
Tobias Fiedler
,
Hoang An Nguyen
,
Melania Nowicka
,
Jakub M Bartoszewicz
MLCB '24
Readers:
Everyone
Evaluating Prompt Tuning for Conditional Protein Sequence Generation
Andrea Nathansen
,
Kevin Klein
,
Bernhard Y Renard
,
Melania Nowicka
,
Jakub M Bartoszewicz
Published: 06 Mar 2023, Last Modified: 05 May 2023
ICLR 2023 - MLDD Poster
Readers:
Everyone
CovRadar: continuously tracking and filtering SARS-CoV-2 mutations for genomic surveillance
Alice Wittig
,
Fábio Miranda
,
Martin Hölzer
,
Tom Altenburg
,
Jakub M. Bartoszewicz
,
Sebastian Beyvers
,
Marius A. Dieckmann
,
Ulrich Genske
,
Sven H. Giese
,
Melania Nowicka
,
Hugues Richard
,
Henning Schiebenhoefer
,
Anna-Juliane Schmachtenberg
,
Paul Sieben
,
Ming Tang
,
Julius Tembrockhaus
,
Bernhard Y. Renard
,
Stephan Fuchs
Published: 01 Jan 2022, Last Modified: 09 Feb 2024
Bioinform. 2022
Readers:
Everyone
Deep learning approaches for predicting pathogenic potentials of novel DNA and RNA sequences
Jakub M. Bartoszewicz
Published: 01 Jan 2022, Last Modified: 09 Feb 2024
undefined 2022
Readers:
Everyone
Deep learning-based real-time detection of novel pathogens during sequencing
Jakub M. Bartoszewicz
,
Ulrich Genske
,
Bernhard Y. Renard
Published: 01 Jan 2021, Last Modified: 09 Feb 2024
Briefings Bioinform. 2021
Readers:
Everyone
DeePaC: predicting pathogenic potential of novel DNA with reverse-complement neural networks
Jakub M. Bartoszewicz
,
Anja Seidel
,
Robert Rentzsch
,
Bernhard Y. Renard
Published: 01 Jan 2020, Last Modified: 09 Feb 2024
Bioinform. 2020
Readers:
Everyone
Co-Authors
Alice Wittig
Andrea Nathansen
Anja Seidel
Anna-Juliane Schmachtenberg
Bernhard Y Renard
Bernhard Y. Renard
Fábio Miranda
Henning Schiebenhoefer
Hoang An Nguyen
Hugues Richard
Julius Tembrockhaus
Kevin Klein
Leon Hermann
Marius A. Dieckmann
Marta Stefania Lemanczyk
Martin Hölzer
Melania Nowicka
Ming Tang
Paul Sieben
Robert Rentzsch
Sebastian Beyvers
Stephan Fuchs
Sven H. Giese
Tobias Fiedler
Tom Altenburg
View all 26 co-authors