John D Osborne

Associate Professor, Department of Biomedical Informatics and Data Science, University of Alabama at Birmingham

Joined

September 2022

Names

John D Osborne (Preferred)

John D. Osborne

John David Osborne

John Osborne

Emails

****@uabmc.edu (Confirmed)

****@gmail.com (Confirmed)

****@uab.edu (Confirmed)

Personal Links

Career & Education History

Associate Professor

Department of Biomedical Informatics and Data Science, University of Alabama at Birmingham (uab.edu)

2024 – Present

Assistant Professor

Medicine, University of Alabama at Birmingham (uab.edu)

2017 – 2024

Advisors, Relations & Conflicts

PhD Advisor

Steven Bethard

2014 – 2017

PhD Advisor

Thamar Solorio

2011 – 2014

Expertise

Natural Language Processing

2012 – Present

Publications

Multi-task transfer learning for the prediction of entity modifiers in clinical text: application to opioid use disorder case detection
Abdullateef I. Almudaifer, Whitney L. Covington, JaMor Hairston, Zachary Deitch, Ankit Anand, Caleb M. Carroll, Estera Crisan, William Bradford, Lauren Walter, Ellen F. Eaton, Sue S. Feldman, John D. Osborne
- J. Biomed. Semant. 2024
- Readers: Everyone
Environment Scan of Generative AI Infrastructure for Clinical and Translational Science
Betina Idnay, Zihan Xu, William G. Adams, Mohammad Adibuzzaman, Nicholas R. Anderson, Neil Bahroos, Douglas S. Bell, Cody Bumgardner, Thomas R. Campion Jr., Victor M. Castro, James J. Cimino, I. Glenn Cohen, David A. Dorr, Peter L. Elkin, Jungwei W. Fan, Todd Ferris, David J. Foran, David A. Hanauer, Mike Hogarth, Kun Huang et al. (37 additional authors not shown)
- CoRR 2024
- Readers: Everyone
Transfer Learning for the Prediction of Entity Modifiers in Clinical Text: Application to Opioid Use Disorder Case Detection
Abdullateef I. Almudaifer, Tobias O'Leary, Whitney L. Covington, JaMor Hairston, Zachary Deitch, Ankit Anand, Caleb M. Carroll, Estera Crisan, William Bradford, Lauren Walter, Ellen F. Eaton, Sue S. Feldman, John D. Osborne
- CoRR 2024
- Readers: Everyone
Disease Entity Recognition and Normalization is Improved with Large Language Model Derived Synthetic Normalized Mentions
Kuleen Sasse, Shinjitha Vadlakonda, Richard E. Kennedy, John D. Osborne
- CoRR 2024
- Readers: Everyone
Mapping Bias in Vision Language Models: Signposts, Pitfalls, and the Road Ahead
Kuleen Sasse, Shan Chen, Jackson Pond, Danielle S. Bitterman, John D. Osborne
- CoRR 2024
- Readers: Everyone
An open natural language processing (NLP) framework for EHR-based clinical research: a case demonstration using the National COVID Cohort Collaborative (N3C)
Sijia Liu, Andrew Wen, Liwei Wang, Huan He, Sunyang Fu, Robert T. Miller, Andrew E. Williams, Daniel R. Harris, Ramakanth Kavuluru, Mei Liu, Noor Abu-El-Rub, Dalton Schutte, Rui Zhang, Masoud Rouhizadeh, John D. Osborne, Yongqun He, Umit Topaloglu, Stephanie S. Hong, Joel H. Saltz, Thomas Schaffter et al. (8 additional authors not shown)
- J. Am. Medical Informatics Assoc. 2023
- Readers: Everyone
Annotation of Opioid Use Disorder Entity Modifiers in Clinical Text
Abdullateef I. Almudaifer, Sue S. Feldman, Tobias O'Leary, Whitney L. Covington, JaMor Hairston, Zachary Deitch, Estera Crisan, Kevin Riggs, Lauren Walter, John D. Osborne
- MedInfo 2023
- Readers: Everyone
BRATsynthetic: Text De-identification using a Markov Chain Replacement Strategy for Surrogate Personal Identifying Information
John D. Osborne, Tobias O'Leary, Akhil Nadimpalli, Salma M. Aly, Richard E. Kennedy
- CoRR 2022
- Readers: Everyone
The precision medicine process for treating rare disease using the artificial intelligence tool mediKanren
Aleksandra Foksinska, Camerron M. Crowder, Andrew B. Crouse, Jeff Henrikson, William E. Byrd, Gregory Rosenblatt, Michael J. Patton, Kaiwen He, Thi K. Tran-Nguyen, Marissa Zheng, Stephen A. Ramsey, Nada Amin, John D. Osborne, Matthew Might
- Frontiers Artif. Intell. 2022
- Readers: Everyone
Towards Identification of Opiate Use Disorder in Clinical Text
John D. Osborne, Tobias O'Leary, Abdullateef I. Almudaifer, Whitney L. Covington, Caleb M. Carroll, Ellen F. Eaton, Rachel A. Lee, Sue S. Feldman, Lauren Walter
- AMIA 2021
- Readers: Everyone

View all 24 publications

Co-Authors

View all 151 co-authors