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Juan C. Caicedo
Assistant Professor, University of Wisconsin - Madison
Joined
September 2017
Names
Juan C. Caicedo
(Preferred)
,
Juan C Caicedo
,
Juan Caicedo
Emails
****@konradlorenz.edu.co
(Confirmed)
,
****@broad.mit.edu
(Confirmed)
,
****@broadinstitute.org
(Confirmed)
,
****@wisc.edu
(Confirmed)
,
****@morgridge.org
(Confirmed)
Personal Links
Homepage
Google Scholar
DBLP
LinkedIn
Career & Education History
Assistant Professor
University of Wisconsin - Madison
(wisc.edu)
2023
–
Present
Principal Researcher
Broad Institute of MIT and Harvard
(broadinstitute.org)
2019
–
2023
Postdoc Researcher
Broad Institute of MIT and Harvard
(broadinstitute.org)
2016
–
2019
Postdoc Researcher
University of Illinois, Urbana Champaign
(illinois.edu)
2013
–
2014
PhD Student
Universidad Nacional de Colombia
(unal.edu.co)
2008
–
2012
Advisors, Relations & Conflicts
Postdoc Advisor
Anne Carpenter
2015
–
2019
Postdoc Advisor
Svetlana Lazebnik
2012
–
2014
PhD Advisor
Fabio Gonzalez
2006
–
2012
Expertise
Bioimage analysis
2016
–
Present
Cell microscopy
2016
–
Present
Representation learning
2010
–
Present
Publications
CHAMMI-75: Pre-training multi-channel models with heterogeneous microscopy images
Vidit Agrawal
,
John Peters
,
Tyler N. Thompson
,
Mohammad Vali Sanian
,
Chau Pham
,
Nikita Moshkov
,
Arshad Kazi
,
Aditya Pillai
,
Jack Freeman
,
Byunguk Kang
,
Samouil L. Farhi
,
Ernest Fraenkel
,
Ron M. Stewart
,
Lassi Paavolainen
,
Bryan A. Plummer
,
Juan C. Caicedo
ICLR 2026 Poster
Readers:
Everyone
ChA-MAEViT: Unifying Channel-Aware Masked Autoencoders and Multi-Channel Vision Transformers for Improved Cross-Channel Learning
Chau Pham
,
Juan C. Caicedo
,
Bryan A. Plummer
NeurIPS 2025 poster
Readers:
Everyone
Scaling Channel-Adaptive Self-Supervised Learning
Alice V. De Lorenci
,
Seung Eun Yi
,
Théo Moutakanni
,
Piotr Bojanowski
,
Camille Couprie
,
Juan C. Caicedo
,
Wolfgang Maximilian Anton Pernice
Accepted by TMLR
Readers:
Everyone
Scaling Channel-Invariant Self-Supervised Learning
Alice V. De Lorenci
,
Seung Eun Yi
,
Théo Moutakanni
,
Piotr Bojanowski
,
camille couprie
,
Juan C Caicedo
,
Wolfgang Maximilian Anton Pernice
Submitted to ICLR 2025
Readers:
Everyone
Analysis of cellular phenotypes with unbiased image-based generative models
Ruben Fonnegra
,
Mohammad Sanian
,
Zitong Chen
,
Lassi Paavolainen
,
Juan Caicedo
GenBio@NeurIPS2023 Spotlight
Readers:
Everyone
CHAMMI: A benchmark for channel-adaptive models in microscopy imaging
Zitong Chen
,
Chau Pham
,
Siqi Wang
,
Michael Doron
,
Nikita Moshkov
,
Bryan A. Plummer
,
Juan C Caicedo
NeurIPS 2023 Datasets and Benchmarks Poster
Readers:
Everyone
Out of Distribution Generalization via Interventional Style Transfer in Single-Cell Microscopy
Wolfgang M. Pernice
,
Michael Doron
,
Alex Quach
,
Aditya Pratapa
,
Sultan Kenjeyev
,
Nicholas De Veaux
,
Michio Hirano
,
Juan C. Caicedo
CoRR 2023
Readers:
Everyone
CHAMMI: A benchmark for channel-adaptive models in microscopy imaging
Zitong Sam Chen
,
Chau Pham
,
Siqi Wang
,
Michael Doron
,
Nikita Moshkov
,
Bryan A. Plummer
,
Juan C. Caicedo
NeurIPS 2023
Readers:
Everyone
Early-to-Late Prediction of DCE-MRI Contrast-Enhanced Images in Using Generative Adversarial Networks
Rubén D. Fonnegra
,
Liliana M. Hernández
,
Juan C. Caicedo
,
Gloria M. Díaz
ISBI 2023
Readers:
Everyone
View all 56 publications
Co-Authors
Aditya Pillai
Aditya Pratapa
Alex Quach
Alice V. De Lorenci
Allen Goodman
Andrés Pérez
Angel Cruz-Roa
Angie K. Reyes
Angélica Quevedo
Anne E Carpenter
Anne E. Carpenter
Antoine Doucet
Anyela M. Chavarro
Arshad Kazi
Ashish Kapoor
Beth A Cimini
Bryan A. Plummer
Byunguk Kang
Camille Couprie
Chau Pham
CherKeng Heng
Chris M. Cervantes
Claire McQuin
Dani Lischinski
Ebroul Izquierdo
View all 88 co-authors