Mohammed Alser

Assistant Professor, Georgia State University

Joined

June 2026

Names

Mohammed Alser (Preferred)

Emails

****@gmail.com (Confirmed)

****@gsu.edu (Confirmed)

Personal Links

Career & Education History

Assistant Professor

Georgia State University (gsu.edu)

2024 – Present

Advisors, Relations & Conflicts

PhD Advisor

Can Alkan

2014 – 2018

Expertise

Bioinformatics

2014 – Present

Read mapping

2014 – Present

Metagenomics

2014 – Present

Publications

Assessing genomic reproducibility of read alignment tools
Pelin Icer Baykal, Mike Simonov, Dhrithi Deshpande, Ful Belin Korukoglu, Jaden Moore, Karishma Chhugani, Cecilia Liu, Varuni Sarwal, Neha Rajkumar, Mohammed Alser, Niko Beerenwinkel, Serghei Mangul
- Crossref
- Readers: Everyone
CiMBA: Accelerating Genome Sequencing Through On-Device Basecalling via Compute-in-Memory
William Andrew Simon, Irem Boybat, Riselda Kodra, Elena Ferro, Gagandeep Singh, Mohammed Alser, Shubham Jain, Hsinyu Tsai, Geoffrey W. Burr, Onur Mutlu, Abu Sebastian
- IEEE Transactions on Parallel and Distributed Systems
- Readers: Everyone
Analysis of metagenomic data
Shaopeng Liu, Judith S. Rodriguez, Viorel Munteanu, Cynthia Ronkowski, Nitesh Kumar Sharma, Mohammed Alser, Francesco Andreace, Ran Blekhman, Dagmara Błaszczyk, Rayan Chikhi, Keith A. Crandall, Katja Della Libera, Dallace Francis, Alina Frolova, Abigail Shahar Gancz, Naomi E. Huntley, Pooja Jaiswal, Tomasz Kosciolek, Pawel P. Łabaj, Wojciech Łabaj et al. (20 additional authors not shown)
- Nature Reviews Methods Primers
- Readers: Everyone
Taming large-scale genomic analyses via sparsified genomics
Mohammed Alser, Julien Eudine, Onur Mutlu
- Nature Communications
- Readers: Everyone
GateKeeper-GPU: Fast and Accurate Pre-Alignment Filtering in Short Read Mapping
Zülal Bingöl, Mohammed Alser, Onur Mutlu, Ozcan Ozturk, Can Alkan
- IEEE Transactions on Computers
- Readers: Everyone
Packaging and containerization of computational methods
Mohammed Alser, Brendan Lawlor, Richard J. Abdill, Sharon Waymost, Ram Ayyala, Neha Rajkumar, Nathan LaPierre, Jaqueline Brito, André M. Ribeiro-dos-Santos, Nour Almadhoun, Varuni Sarwal, Can Firtina, Tomasz Osinski, Eleazar Eskin, Qiyang Hu, Derek Strong, Byoung-Do Kim, Malak S. Abedalthagafi, Onur Mutlu, Serghei Mangul
- Nature Protocols
- Readers: Everyone
Demeter: A Fast and Energy-Efficient Food Profiler Using Hyperdimensional Computing in Memory
Taha Shahroodi, Mahdi Zahedi, Can Firtina, Mohammed Alser, Stephan Wong, Onur Mutlu, Said Hamdioui
- IEEE Access
- Readers: Everyone
FPGA-Based Near-Memory Acceleration of Modern Data-Intensive Applications
Gagandeep Singh, Mohammed Alser, Damla Senol Cali, Dionysios Diamantopoulos, Juan Gomez-Luna, Henk Corporaal, Onur Mutlu
- IEEE Micro
- Readers: Everyone
COVIDHunter: An Accurate, Flexible, and Environment-Aware Open-Source COVID-19 Outbreak Simulation Model
Mohammed Alser, Jeremie S. Kim, Nour Almadhoun Alserr, Stefan W. Tell, Onur Mutlu
- Crossref
- Readers: Everyone
SneakySnake: a fast and accurate universal genome pre-alignment filter for CPUs, GPUs and FPGAs
Mohammed Alser, Taha Shahroodi, Juan Gómez-Luna, Can Alkan, Onur Mutlu, Peter Robinson
- Bioinformatics
- Readers: Everyone

Co-Authors

View all 90 co-authors