ICLR 2025 Workshop AI4NA Submissions

HARMONY: A Multi-Representation Framework for RNA Property Prediction
Junjie Xu, Artem Moskalev, Tommaso Mansi, Mangal Prakash, Rui Liao
- Published: 05 Mar 2025, Last Modified: 16 Apr 2025
- ICLR 2025 AI4NA Oral
- Readers: Everyone
RNAlign: Alignment of tumor and cell line transcriptomes using conditional VAEs
Jacob Alvarez, Kiran Krishnamachari, Anders Jacobsen Skanderup
- Published: 05 Mar 2025, Last Modified: 15 May 2025
- ICLR 2025 AI4NA Poster
- Readers: Everyone
Benchmarking Fine-Tuned RNA Language Models for Intronic Branch Point Prediction
Pablo Rodenas Ruiz, Ali Saadat, Timothy T. Tran, Oliver Müller Smedt, Peng Zhang, Jacques Fellay
- Published: 05 Mar 2025, Last Modified: 16 Apr 2025
- ICLR 2025 AI4NA Poster
- Readers: Everyone
HyperGenie: A method for predicting enzymatic gene essentiality using hypergraph neural networks and genome-scale metabolic models
Panayiotis Ioannou, Iulia Duta, Suraj Verma, Pietro Cicuta, Pietro Lio, Claudio Angione
- Published: 05 Mar 2025, Last Modified: 16 Apr 2025
- ICLR 2025 AI4NA Poster
- Readers: Everyone
InfoSEM: A Deep Generative Model with Informative Priors for Gene Regulatory Network Inference
Tianyu Cui, Song-Jun Xu, Artem Moskalev, Shuwei Li, Tommaso Mansi, Mangal Prakash, Rui Liao
- Published: 05 Mar 2025, Last Modified: 16 Apr 2025
- ICLR 2025 AI4NA Oral
- Readers: Everyone
A Comprehensive Library for RNA Structure-Function Modeling
Luis Wyss, Vincent Mallet, Wissam Karroucha, Karsten Borgwardt, Carlos Oliver
- Published: 05 Mar 2025, Last Modified: 16 Apr 2025
- ICLR 2025 AI4NA Poster
- Readers: Everyone
arowana: a transformer-based training framework for RNA basecalling and modification detection
Yuk Kei Wan, Christopher Hendra, Bing Shao Chia, Wei Leong Chew, Jonathan Goeke
- Published: 05 Mar 2025, Last Modified: 16 Apr 2025
- ICLR 2025 AI4NA Poster
- Readers: Everyone
Flexible Models of Functional Annotations to Variant Effects using Accelerated Linear Algebra
Alan Nawzad Amin, Andres Potapczynski, Andrew Gordon Wilson
- Published: 05 Mar 2025, Last Modified: 16 Apr 2025
- ICLR 2025 AI4NA Oral
- Readers: Everyone
SPACE: Your Genomic Profile Predictor is a Powerful DNA Foundation Model
Jiwei Zhu, Zhao Yang, Bing Su
- Published: 05 Mar 2025, Last Modified: 16 Apr 2025
- ICLR 2025 AI4NA Poster
- Readers: Everyone
Bayesian Approximation of RNA Folding Times
Dominik Scheuer, Frederic Runge, Jörg K.H. Franke, Michael T. Wolfinger, Christoph Flamm, Frank Hutter
- Published: 05 Mar 2025, Last Modified: 16 Apr 2025
- ICLR 2025 AI4NA Poster
- Readers: Everyone