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Retrieval-Augmented Generation for Predicting Cellular Responses to Gene Perturbation
Andrea Giuseppe Di Francesco, Andrea Rubbi, Pietro Lio
- Published: 02 Mar 2026, Last Modified: 10 Mar 2026
- Gen² 2026 Poster
- Readers: Everyone
CausalOmics-10T: An Evolving Foundational Dataset to Enable Causal Modeling of Microbial Ecosystems
Arvid E. Gollwitzer, David de Gruijl
- Published: 02 Mar 2026, Last Modified: 02 Mar 2026
- Gen² 2026 Poster
- Readers: Everyone
On the role of drug representations in single-cell perturbation modeling
Marco Pegoraro, Sanketh Vedula, Lion Halika, Michael M Danziger, Alexander Bronstein, Michal Rosen-Zvi
- Published: 02 Mar 2026, Last Modified: 10 Mar 2026
- Gen² 2026 Poster
- Readers: Everyone
Trajectory-conditioned reconstruction of single-cell expression suggests regulatory programs
Wenjie Fan, Antonio Orvieto, Manfred Claassen
- Published: 02 Mar 2026, Last Modified: 10 Mar 2026
- Gen² 2026 Poster
- Readers: Everyone
Enigma: An Efficient Model for Deciphering Regulatory Genomics
Andrew J Jung, ALICE J. GAO, Vivian Chu, Leo J Lee, Brendan Frey
- Published: 02 Mar 2026, Last Modified: 13 Mar 2026
- Gen² 2026 PosterTop10
- Readers: Everyone
Genes Are Not Words: Dependency-Aware Masking for Single-Cell Foundation Models
Alon Hacohen, Joseph Charles Bingham, Binyamin Perets, Dvir Aran
- Published: 02 Mar 2026, Last Modified: 13 Mar 2026
- Gen² 2026 PosterTop10
- Readers: Everyone
Dissecting and Steering Cell Identity in a Single-Cell Foundation Model Using Sparse Autoencoders
Nicolas Yanovsky, Ariel Chernomoretz
- Published: 02 Mar 2026, Last Modified: 13 Mar 2026
- Gen² 2026 Poster
- Readers: Everyone
Continuous Diffusion Transformers for Designing Synthetic Regulatory Elements
Jonathan Liu, Kia Ghods
- Published: 02 Mar 2026, Last Modified: 13 Mar 2026
- Gen² 2026 Poster
- Readers: Everyone
Distilling Genomic Models for Efficient mRNA Representation Learning via Embedding Matching
Rasched Haidari, Sam Martin, Maxime Allard
- Published: 02 Mar 2026, Last Modified: 13 Mar 2026
- Gen² 2026 Poster
- Readers: Everyone
SplicedVAE: Learning Splicing Ratios from scRNA-seq to Enhance RNA Velocity and Cellular Trajectories
Sahil Gupta, Andrew Ni, Jiaqi Zhang
- Published: 02 Mar 2026, Last Modified: 10 Mar 2026
- Gen² 2026 Poster
- Readers: Everyone
Effects of Distance Metrics and Scaling on the Perturbation Discrimination Score
Qiyuan Liu, Qirui Zhang, Jin-Hong Du, Siming Zhao, Jingshu Wang
- Published: 02 Mar 2026, Last Modified: 13 Mar 2026
- Gen² 2026 OralTop10
- Readers: Everyone
MapPFN: Learning Causal Perturbation Maps in Context
Marvin Sextro, Weronika Kłos, Gabriel Dernbach
- Published: 02 Mar 2026, Last Modified: 10 Mar 2026
- Gen² 2026 Poster
- Readers: Everyone
Optimizing Genomic Language Models for Efficient Training, Fine-Tuning, and Inference
Ali Saadat, Jacques Fellay
- Published: 02 Mar 2026, Last Modified: 10 Mar 2026
- Gen² 2026 Poster
- Readers: Everyone
A Standardized Framework For Evaluating Gene Expression Generative Models
Andrea Rubbi, Andrea Giuseppe Di Francesco, Mohammad Lotfollahi, Pietro Lio
- Published: 02 Mar 2026, Last Modified: 10 Mar 2026
- Gen² 2026 PosterTop10
- Readers: Everyone
GPC: Deep generative model of genetic variation data improves imputation accuracy in private populations
Prateek Anand, Anji Liu, Meihua Dang, Boyang Fu, Xinzhu Wei, Guy Van den Broeck, Sriram Sankararaman
- Published: 02 Mar 2026, Last Modified: 10 Mar 2026
- Gen² 2026 OralTop10
- Readers: Everyone
BiomedSQL: Text-to-SQL for Scientific Reasoning on Biomedical Knowledge Bases
Mathew J. Koretsky, Maya Willey, Owen Bianchi, Chelsea X Alvarado, Tanay Nayak, Nicole Kuznetsov, Sungwon Kim, Michael Nalls, Daniel Khashabi, Faraz Faghri
- Published: 02 Mar 2026, Last Modified: 18 Mar 2026
- Gen² 2026 Poster
- Readers: Everyone
DISCRETE FLOW MATCHING FOR REGULATORY DNA SEQUENCE DESIGN
Muhammad Hashaam, Maria Poptsova
- Published: 02 Mar 2026, Last Modified: 13 Mar 2026
- Gen² 2026 Poster
- Readers: Everyone
ON THE IMPACT OF EMBEDDING ANISOTROPY IN GENOMIC LANGUAGE MODELS FOR BACTERIAL TAXONOMY
Mike Leske, Francesca Bottacini, Rafael Ricardo de Castro Cuadrat, Haithem Afli, Bruno Gabriel Nascimento Andrade
- Published: 02 Mar 2026, Last Modified: 10 Mar 2026
- Gen² 2026 Poster
- Readers: Everyone
Generative modeling reveals the connection between cellular morphology and gene expression
Shuo Wen, Ramon Viñas Torné, Johannes Bues, Camille Lambert, Nadia Grenningloh, Timothee Ferrari, Elisa Bugani, Joern Pezoldt, Jillian Love, Wouter Karthaus, Bart Deplancke, Maria Brbic
- Published: 02 Mar 2026, Last Modified: 10 Mar 2026
- Gen² 2026 Poster
- Readers: Everyone
Large-Scale Benchmarking of Gene and Expression Encoding Strategies for Single-Cell Foundation Models
Igor Sadalski
- Published: 02 Mar 2026, Last Modified: 10 Mar 2026
- Gen² 2026 Poster
- Readers: Everyone
Accelerating Scientific Discovery with Autonomous Goal-evolving Agents
Yuanqi Du, Botao Yu, Tianyu Liu, Tony Shen, Junwu Chen, Jan G. Rittig, Kunyang Sun, Yikun Zhang, Cassandra Masschelein, Yingze Wang, Haorui Wang, Haojun Jia, Chao Zhang, Hongyu Zhao, Martin Ester, Teresa Head-Gordon, Carla P Gomes, Huan Sun, Chenru Duan, Philippe Schwaller et al. (1 additional authors not shown)
From sequence to strength: prediction and design of intrinsic transcription terminators
Guilherme Engelberto Kundlatsch, Almiro Pires da Silva Neto, Gabriela Barbosa de Paiva, Elibio Leopoldo Rech Filho, Leonardo Tomazeli Duarte, Danielle Biscaro Pedrolli
- Published: 02 Mar 2026, Last Modified: 13 Mar 2026
- Gen² 2026 Poster
- Readers: Everyone
Motif-Gen: Learning the Compositional Logic of Gene Regulation for De Novo DNA Design
Shentong Mo
- Published: 02 Mar 2026, Last Modified: 02 Mar 2026
- Gen² 2026 Poster
- Readers: Everyone
Reward-Guided Discrete Diffusion via Clean-Sample Markov Chain for Molecule and Biological Sequence Design
Prin Phunyaphibarn, Minhyuk Sung
- Published: 02 Mar 2026, Last Modified: 13 Mar 2026
- Gen² 2026 OralTop10
- Readers: Everyone
DREAM-DNA: Controlled Design via Reasoning and Matched-flows for DNA
Weimin Wu, Jiunhau Chen, Xuefeng Song, Jerry Yao-Chieh Hu, Han Liu
- Published: 02 Mar 2026, Last Modified: 10 Mar 2026
- Gen² 2026 Poster
- Readers: Everyone

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Published: 02 Mar 2026, Last Modified: 02 Mar 2026

Gen² 2026 Poster

Readers: Everyone